Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC28.87■■■□□ 2.21
SMC1BQ8NDV3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC28.87■■■□□ 2.21
SMC1BQ8NDV3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
SMC1BQ8NDV3 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
SMC1BQ8NDV3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC28.87■■■□□ 2.21
SMC1BQ8NDV3 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC28.87■■■□□ 2.21
SMC1BQ8NDV3 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC28.87■■■□□ 2.21
SMC1BQ8NDV3 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC28.86■■■□□ 2.21
SMC1BQ8NDV3 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC28.86■■■□□ 2.21
SMC1BQ8NDV3 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC28.86■■■□□ 2.21
SMC1BQ8NDV3 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC28.86■■■□□ 2.21
SMC1BQ8NDV3 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.85■■■□□ 2.21
SMC1BQ8NDV3 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC28.85■■■□□ 2.21
SMC1BQ8NDV3 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC28.85■■■□□ 2.21
SMC1BQ8NDV3 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC28.85■■■□□ 2.21
SMC1BQ8NDV3 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
SMC1BQ8NDV3 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SMC1BQ8NDV3 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC28.84■■■□□ 2.21
SMC1BQ8NDV3 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC28.84■■■□□ 2.21
SMC1BQ8NDV3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC28.84■■■□□ 2.21
SMC1BQ8NDV3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SMC1BQ8NDV3 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
SMC1BQ8NDV3 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC28.83■■■□□ 2.21
SMC1BQ8NDV3 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC28.83■■■□□ 2.21
SMC1BQ8NDV3 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
SMC1BQ8NDV3 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC28.82■■■□□ 2.2
SMC1BQ8NDV3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
SMC1BQ8NDV3 CD72-202ENST00000378430 585 ntTSL 3 BASIC28.82■■■□□ 2.2
SMC1BQ8NDV3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC28.82■■■□□ 2.2
SMC1BQ8NDV3 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC28.82■■■□□ 2.2
SMC1BQ8NDV3 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC28.82■■■□□ 2.2
SMC1BQ8NDV3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC28.81■■■□□ 2.2
SMC1BQ8NDV3 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC28.81■■■□□ 2.2
SMC1BQ8NDV3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SMC1BQ8NDV3 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SMC1BQ8NDV3 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC28.81■■■□□ 2.2
SMC1BQ8NDV3 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC28.81■■■□□ 2.2
SMC1BQ8NDV3 AC024257.2-201ENST00000549699 147 ntBASIC28.81■■■□□ 2.2
SMC1BQ8NDV3 AL136967.2-201ENST00000623968 743 ntBASIC28.81■■■□□ 2.2
SMC1BQ8NDV3 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC28.8■■■□□ 2.2
SMC1BQ8NDV3 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SMC1BQ8NDV3 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SMC1BQ8NDV3 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC28.8■■■□□ 2.2
SMC1BQ8NDV3 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC28.8■■■□□ 2.2
SMC1BQ8NDV3 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC28.79■■■□□ 2.2
SMC1BQ8NDV3 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC28.79■■■□□ 2.2
SMC1BQ8NDV3 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.79■■■□□ 2.2
SMC1BQ8NDV3 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.79■■■□□ 2.2
SMC1BQ8NDV3 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
SMC1BQ8NDV3 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC28.78■■■□□ 2.2
SMC1BQ8NDV3 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC28.78■■■□□ 2.2
SMC1BQ8NDV3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC28.78■■■□□ 2.2
SMC1BQ8NDV3 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
SMC1BQ8NDV3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC28.77■■■□□ 2.2
SMC1BQ8NDV3 AF213884.3-201ENST00000563833 479 ntBASIC28.77■■■□□ 2.2
SMC1BQ8NDV3 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
SMC1BQ8NDV3 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SMC1BQ8NDV3 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SMC1BQ8NDV3 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC28.76■■■□□ 2.19
SMC1BQ8NDV3 CLTA-210ENST00000540080 989 ntTSL 2 BASIC28.76■■■□□ 2.19
SMC1BQ8NDV3 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SMC1BQ8NDV3 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.76■■■□□ 2.19
SMC1BQ8NDV3 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SMC1BQ8NDV3 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
SMC1BQ8NDV3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC28.75■■■□□ 2.19
SMC1BQ8NDV3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
SMC1BQ8NDV3 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SMC1BQ8NDV3 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC28.75■■■□□ 2.19
SMC1BQ8NDV3 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SMC1BQ8NDV3 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC28.74■■■□□ 2.19
SMC1BQ8NDV3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC28.74■■■□□ 2.19
SMC1BQ8NDV3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
SMC1BQ8NDV3 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
SMC1BQ8NDV3 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SMC1BQ8NDV3 AP002414.2-202ENST00000590929 1450 ntBASIC28.73■■■□□ 2.19
SMC1BQ8NDV3 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SMC1BQ8NDV3 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SMC1BQ8NDV3 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SMC1BQ8NDV3 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SMC1BQ8NDV3 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
SMC1BQ8NDV3 GRAMD4P4-201ENST00000613563 1115 ntBASIC28.72■■■□□ 2.19
SMC1BQ8NDV3 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC28.71■■■□□ 2.19
SMC1BQ8NDV3 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SMC1BQ8NDV3 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
SMC1BQ8NDV3 MIR939-201ENST00000401314 82 ntBASIC28.71■■■□□ 2.19
SMC1BQ8NDV3 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC28.71■■■□□ 2.19
SMC1BQ8NDV3 STOX2-205ENST00000513034 807 ntTSL 3 BASIC28.71■■■□□ 2.19
SMC1BQ8NDV3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
SMC1BQ8NDV3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC28.71■■■□□ 2.19
SMC1BQ8NDV3 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
SMC1BQ8NDV3 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC28.7■■■□□ 2.19
SMC1BQ8NDV3 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC28.7■■■□□ 2.18
SMC1BQ8NDV3 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SMC1BQ8NDV3 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SMC1BQ8NDV3 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC28.7■■■□□ 2.18
SMC1BQ8NDV3 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SMC1BQ8NDV3 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC28.7■■■□□ 2.18
SMC1BQ8NDV3 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.18
SMC1BQ8NDV3 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SMC1BQ8NDV3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC28.7■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms