Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC27.54■■■□□ 2
SH3RF1Q7Z6J0 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC27.54■■■□□ 2
SH3RF1Q7Z6J0 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC27.53■■■□□ 2
SH3RF1Q7Z6J0 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
SH3RF1Q7Z6J0 HYI-210ENST00000486909 905 ntTSL 5 BASIC27.53■■■□□ 2
SH3RF1Q7Z6J0 PRTG-204ENST00000561292 833 ntTSL 3 BASIC27.53■■■□□ 2
SH3RF1Q7Z6J0 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC27.53■■■□□ 2
SH3RF1Q7Z6J0 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC27.53■■■□□ 2
SH3RF1Q7Z6J0 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC27.53■■■□□ 2
SH3RF1Q7Z6J0 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
SH3RF1Q7Z6J0 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC27.53■■■□□ 2
SH3RF1Q7Z6J0 MIR935-201ENST00000401179 91 ntBASIC27.52■■■□□ 2
SH3RF1Q7Z6J0 AC103724.3-201ENST00000564481 992 ntBASIC27.52■■■□□ 2
SH3RF1Q7Z6J0 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC27.52■■■□□ 2
SH3RF1Q7Z6J0 AC018755.3-202ENST00000596210 929 ntBASIC27.52■■■□□ 2
SH3RF1Q7Z6J0 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC27.52■■■□□ 2
SH3RF1Q7Z6J0 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
SH3RF1Q7Z6J0 PFN2-211ENST00000489155 636 ntTSL 4 BASIC27.51■■□□□ 1.99
SH3RF1Q7Z6J0 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC27.51■■□□□ 1.99
SH3RF1Q7Z6J0 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■□□□ 1.99
SH3RF1Q7Z6J0 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC27.51■■□□□ 1.99
SH3RF1Q7Z6J0 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC27.51■■□□□ 1.99
SH3RF1Q7Z6J0 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC27.5■■□□□ 1.99
SH3RF1Q7Z6J0 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SH3RF1Q7Z6J0 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC27.5■■□□□ 1.99
SH3RF1Q7Z6J0 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SH3RF1Q7Z6J0 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 MIR3960-201ENST00000583311 91 ntBASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
SH3RF1Q7Z6J0 IDNK-201ENST00000376417 511 ntTSL 5 BASIC27.48■■□□□ 1.99
SH3RF1Q7Z6J0 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SH3RF1Q7Z6J0 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC27.48■■□□□ 1.99
SH3RF1Q7Z6J0 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SH3RF1Q7Z6J0 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC27.48■■□□□ 1.99
SH3RF1Q7Z6J0 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC27.48■■□□□ 1.99
SH3RF1Q7Z6J0 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SH3RF1Q7Z6J0 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SH3RF1Q7Z6J0 AL031848.2-201ENST00000607670 837 ntBASIC27.47■■□□□ 1.99
SH3RF1Q7Z6J0 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC27.47■■□□□ 1.99
SH3RF1Q7Z6J0 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
SH3RF1Q7Z6J0 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
SH3RF1Q7Z6J0 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
SH3RF1Q7Z6J0 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC27.46■■□□□ 1.99
SH3RF1Q7Z6J0 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC27.45■■□□□ 1.99
SH3RF1Q7Z6J0 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC27.45■■□□□ 1.98
SH3RF1Q7Z6J0 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC27.45■■□□□ 1.98
SH3RF1Q7Z6J0 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC27.45■■□□□ 1.98
SH3RF1Q7Z6J0 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC27.45■■□□□ 1.98
SH3RF1Q7Z6J0 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
SH3RF1Q7Z6J0 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC27.44■■□□□ 1.98
SH3RF1Q7Z6J0 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SH3RF1Q7Z6J0 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC27.44■■□□□ 1.98
SH3RF1Q7Z6J0 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SH3RF1Q7Z6J0 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SH3RF1Q7Z6J0 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC27.43■■□□□ 1.98
SH3RF1Q7Z6J0 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC27.43■■□□□ 1.98
SH3RF1Q7Z6J0 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC27.42■■□□□ 1.98
SH3RF1Q7Z6J0 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC27.42■■□□□ 1.98
SH3RF1Q7Z6J0 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
SH3RF1Q7Z6J0 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC27.42■■□□□ 1.98
SH3RF1Q7Z6J0 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
SH3RF1Q7Z6J0 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC27.42■■□□□ 1.98
SH3RF1Q7Z6J0 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SH3RF1Q7Z6J0 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SH3RF1Q7Z6J0 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SH3RF1Q7Z6J0 IDNK-203ENST00000405990 629 ntTSL 2 BASIC27.41■■□□□ 1.98
SH3RF1Q7Z6J0 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC27.41■■□□□ 1.98
SH3RF1Q7Z6J0 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC27.41■■□□□ 1.98
SH3RF1Q7Z6J0 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SH3RF1Q7Z6J0 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SH3RF1Q7Z6J0 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
SH3RF1Q7Z6J0 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SH3RF1Q7Z6J0 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
SH3RF1Q7Z6J0 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC27.39■■□□□ 1.98
SH3RF1Q7Z6J0 AC239859.2-201ENST00000444165 318 ntBASIC27.39■■□□□ 1.98
SH3RF1Q7Z6J0 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC27.39■■□□□ 1.98
SH3RF1Q7Z6J0 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC27.39■■□□□ 1.97
SH3RF1Q7Z6J0 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SH3RF1Q7Z6J0 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC27.38■■□□□ 1.97
SH3RF1Q7Z6J0 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC27.38■■□□□ 1.97
SH3RF1Q7Z6J0 AC020928.2-201ENST00000588717 2197 ntBASIC27.38■■□□□ 1.97
SH3RF1Q7Z6J0 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC27.38■■□□□ 1.97
SH3RF1Q7Z6J0 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
SH3RF1Q7Z6J0 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC27.38■■□□□ 1.97
SH3RF1Q7Z6J0 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SH3RF1Q7Z6J0 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC27.37■■□□□ 1.97
SH3RF1Q7Z6J0 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SH3RF1Q7Z6J0 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms