Protein–RNA interactions for Protein: Q5W0Q7

USPL1, SUMO-specific isopeptidase USPL1, humanhuman

Predictions only

Length 1,092 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USPL1Q5W0Q7 MIR638-201ENST00000385237 100 ntBASIC30.58■■■□□ 2.49
USPL1Q5W0Q7 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
USPL1Q5W0Q7 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
USPL1Q5W0Q7 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
USPL1Q5W0Q7 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.57■■■□□ 2.48
USPL1Q5W0Q7 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USPL1Q5W0Q7 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.57■■■□□ 2.48
USPL1Q5W0Q7 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
USPL1Q5W0Q7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USPL1Q5W0Q7 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USPL1Q5W0Q7 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
USPL1Q5W0Q7 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.55■■■□□ 2.48
USPL1Q5W0Q7 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
USPL1Q5W0Q7 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC30.55■■■□□ 2.48
USPL1Q5W0Q7 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC30.55■■■□□ 2.48
USPL1Q5W0Q7 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
USPL1Q5W0Q7 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.55■■■□□ 2.48
USPL1Q5W0Q7 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC30.55■■■□□ 2.48
USPL1Q5W0Q7 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
USPL1Q5W0Q7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC30.54■■■□□ 2.48
USPL1Q5W0Q7 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.54■■■□□ 2.48
USPL1Q5W0Q7 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC30.53■■■□□ 2.48
USPL1Q5W0Q7 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC30.53■■■□□ 2.48
USPL1Q5W0Q7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.53■■■□□ 2.48
USPL1Q5W0Q7 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
USPL1Q5W0Q7 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
USPL1Q5W0Q7 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.52■■■□□ 2.48
USPL1Q5W0Q7 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.52■■■□□ 2.48
USPL1Q5W0Q7 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
USPL1Q5W0Q7 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.51■■■□□ 2.47
USPL1Q5W0Q7 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC30.51■■■□□ 2.47
USPL1Q5W0Q7 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC30.51■■■□□ 2.47
USPL1Q5W0Q7 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
USPL1Q5W0Q7 BX255925.1-201ENST00000566954 1854 ntBASIC30.5■■■□□ 2.47
USPL1Q5W0Q7 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.5■■■□□ 2.47
USPL1Q5W0Q7 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC30.5■■■□□ 2.47
USPL1Q5W0Q7 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.5■■■□□ 2.47
USPL1Q5W0Q7 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
USPL1Q5W0Q7 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
USPL1Q5W0Q7 AC092028.1-203ENST00000608262 953 ntBASIC30.5■■■□□ 2.47
USPL1Q5W0Q7 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
USPL1Q5W0Q7 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30.49■■■□□ 2.47
USPL1Q5W0Q7 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USPL1Q5W0Q7 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USPL1Q5W0Q7 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
USPL1Q5W0Q7 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC30.49■■■□□ 2.47
USPL1Q5W0Q7 AC131281.2-201ENST00000520478 145 ntBASIC30.49■■■□□ 2.47
USPL1Q5W0Q7 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC30.48■■■□□ 2.47
USPL1Q5W0Q7 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
USPL1Q5W0Q7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC30.48■■■□□ 2.47
USPL1Q5W0Q7 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
USPL1Q5W0Q7 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.47■■■□□ 2.47
USPL1Q5W0Q7 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
USPL1Q5W0Q7 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC30.47■■■□□ 2.47
USPL1Q5W0Q7 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC30.47■■■□□ 2.47
USPL1Q5W0Q7 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
USPL1Q5W0Q7 AL139246.5-201ENST00000606645 996 ntBASIC30.47■■■□□ 2.47
USPL1Q5W0Q7 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
USPL1Q5W0Q7 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
USPL1Q5W0Q7 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
USPL1Q5W0Q7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
USPL1Q5W0Q7 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
USPL1Q5W0Q7 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
USPL1Q5W0Q7 NALT1-201ENST00000429224 738 ntTSL 5 BASIC30.46■■■□□ 2.47
USPL1Q5W0Q7 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC30.46■■■□□ 2.47
USPL1Q5W0Q7 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
USPL1Q5W0Q7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
USPL1Q5W0Q7 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC30.46■■■□□ 2.47
USPL1Q5W0Q7 LINC01003-201ENST00000564834 1764 ntBASIC30.46■■■□□ 2.47
USPL1Q5W0Q7 RPP21-222ENST00000433076 577 ntTSL 2 BASIC30.45■■■□□ 2.47
USPL1Q5W0Q7 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC30.45■■■□□ 2.47
USPL1Q5W0Q7 RALB-208ENST00000631312 311 ntTSL 5 BASIC30.45■■■□□ 2.47
USPL1Q5W0Q7 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
USPL1Q5W0Q7 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.44■■■□□ 2.46
USPL1Q5W0Q7 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USPL1Q5W0Q7 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
USPL1Q5W0Q7 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC30.44■■■□□ 2.46
USPL1Q5W0Q7 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USPL1Q5W0Q7 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC30.44■■■□□ 2.46
USPL1Q5W0Q7 SRR-208ENST00000576848 588 ntTSL 4 BASIC30.44■■■□□ 2.46
USPL1Q5W0Q7 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC30.44■■■□□ 2.46
USPL1Q5W0Q7 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC30.44■■■□□ 2.46
USPL1Q5W0Q7 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USPL1Q5W0Q7 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
USPL1Q5W0Q7 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC30.43■■■□□ 2.46
USPL1Q5W0Q7 MIR4281-201ENST00000580852 62 ntBASIC30.43■■■□□ 2.46
USPL1Q5W0Q7 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USPL1Q5W0Q7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.42■■■□□ 2.46
USPL1Q5W0Q7 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
USPL1Q5W0Q7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC30.41■■■□□ 2.46
USPL1Q5W0Q7 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC30.41■■■□□ 2.46
USPL1Q5W0Q7 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC30.41■■■□□ 2.46
USPL1Q5W0Q7 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
USPL1Q5W0Q7 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC30.4■■■□□ 2.46
USPL1Q5W0Q7 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
USPL1Q5W0Q7 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC30.4■■■□□ 2.46
USPL1Q5W0Q7 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
USPL1Q5W0Q7 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
USPL1Q5W0Q7 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
USPL1Q5W0Q7 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms