Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDX1P47902 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX1P47902 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX1P47902 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDX1P47902 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.24■□□□□ 0.67
CDX1P47902 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDX1P47902 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDX1P47902 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.23■□□□□ 0.67
CDX1P47902 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CDX1P47902 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX1P47902 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX1P47902 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDX1P47902 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX1P47902 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX1P47902 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CDX1P47902 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDX1P47902 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.22■□□□□ 0.67
CDX1P47902 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX1P47902 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.22■□□□□ 0.67
CDX1P47902 NTF6A-201ENST00000591175 560 ntBASIC19.22■□□□□ 0.67
CDX1P47902 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDX1P47902 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC19.22■□□□□ 0.67
CDX1P47902 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CDX1P47902 SMPD5-203ENST00000639008 1464 ntBASIC19.22■□□□□ 0.67
CDX1P47902 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CDX1P47902 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDX1P47902 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDX1P47902 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CDX1P47902 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.21■□□□□ 0.67
CDX1P47902 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.21■□□□□ 0.67
CDX1P47902 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.21■□□□□ 0.67
CDX1P47902 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDX1P47902 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CDX1P47902 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.2■□□□□ 0.66
CDX1P47902 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDX1P47902 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDX1P47902 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.2■□□□□ 0.66
CDX1P47902 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDX1P47902 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDX1P47902 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.2■□□□□ 0.66
CDX1P47902 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDX1P47902 WHAMMP3-201ENST00000611636 1609 ntBASIC19.19■□□□□ 0.66
CDX1P47902 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CDX1P47902 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDX1P47902 AC068473.5-201ENST00000616428 2072 ntBASIC19.19■□□□□ 0.66
CDX1P47902 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC19.18■□□□□ 0.66
CDX1P47902 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CDX1P47902 AC007029.1-201ENST00000604183 313 ntBASIC19.18■□□□□ 0.66
CDX1P47902 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CDX1P47902 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC19.18■□□□□ 0.66
CDX1P47902 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDX1P47902 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX1P47902 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX1P47902 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.17■□□□□ 0.66
CDX1P47902 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.17■□□□□ 0.66
CDX1P47902 AC025884.2-201ENST00000553429 711 ntBASIC19.17■□□□□ 0.66
CDX1P47902 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CDX1P47902 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX1P47902 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.17■□□□□ 0.66
CDX1P47902 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX1P47902 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC19.16■□□□□ 0.66
CDX1P47902 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX1P47902 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CDX1P47902 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDX1P47902 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX1P47902 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
CDX1P47902 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX1P47902 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX1P47902 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CDX1P47902 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.15■□□□□ 0.66
CDX1P47902 LINC01003-201ENST00000564834 1764 ntBASIC19.15■□□□□ 0.66
CDX1P47902 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.15■□□□□ 0.66
CDX1P47902 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC19.15■□□□□ 0.66
CDX1P47902 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDX1P47902 U85056.1-201ENST00000616429 682 ntBASIC19.15■□□□□ 0.66
CDX1P47902 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CDX1P47902 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.15■□□□□ 0.66
CDX1P47902 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX1P47902 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX1P47902 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX1P47902 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CDX1P47902 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.14■□□□□ 0.65
CDX1P47902 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX1P47902 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CDX1P47902 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CDX1P47902 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.14■□□□□ 0.65
CDX1P47902 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX1P47902 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.14■□□□□ 0.65
CDX1P47902 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.13■□□□□ 0.65
CDX1P47902 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.13■□□□□ 0.65
CDX1P47902 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.13■□□□□ 0.65
CDX1P47902 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.13■□□□□ 0.65
CDX1P47902 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX1P47902 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CDX1P47902 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX1P47902 MIR3960-201ENST00000583311 91 ntBASIC19.12■□□□□ 0.65
CDX1P47902 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX1P47902 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CDX1P47902 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.12■□□□□ 0.65
CDX1P47902 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms