Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USF1P22415 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
USF1P22415 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
USF1P22415 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
USF1P22415 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.18■□□□□ 0.82
USF1P22415 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USF1P22415 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USF1P22415 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USF1P22415 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USF1P22415 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
USF1P22415 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.17■□□□□ 0.82
USF1P22415 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.17■□□□□ 0.82
USF1P22415 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USF1P22415 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
USF1P22415 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USF1P22415 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
USF1P22415 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
USF1P22415 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.16■□□□□ 0.82
USF1P22415 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USF1P22415 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USF1P22415 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USF1P22415 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.16■□□□□ 0.82
USF1P22415 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USF1P22415 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USF1P22415 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
USF1P22415 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.15■□□□□ 0.82
USF1P22415 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USF1P22415 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USF1P22415 AC022616.5-201ENST00000518796 181 ntBASIC20.15■□□□□ 0.82
USF1P22415 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.15■□□□□ 0.82
USF1P22415 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.15■□□□□ 0.82
USF1P22415 AL449106.1-201ENST00000608517 1980 ntBASIC20.15■□□□□ 0.82
USF1P22415 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.15■□□□□ 0.82
USF1P22415 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USF1P22415 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USF1P22415 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USF1P22415 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.14■□□□□ 0.81
USF1P22415 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USF1P22415 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USF1P22415 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USF1P22415 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
USF1P22415 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USF1P22415 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USF1P22415 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.14■□□□□ 0.81
USF1P22415 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USF1P22415 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USF1P22415 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USF1P22415 KRT125P-201ENST00000546827 989 ntBASIC20.13■□□□□ 0.81
USF1P22415 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.13■□□□□ 0.81
USF1P22415 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USF1P22415 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USF1P22415 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USF1P22415 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.12■□□□□ 0.81
USF1P22415 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.12■□□□□ 0.81
USF1P22415 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
USF1P22415 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USF1P22415 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USF1P22415 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USF1P22415 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USF1P22415 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
USF1P22415 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.11■□□□□ 0.81
USF1P22415 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
USF1P22415 AC019069.1-201ENST00000610008 1333 ntBASIC20.1■□□□□ 0.81
USF1P22415 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
USF1P22415 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.1■□□□□ 0.81
USF1P22415 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
USF1P22415 BX664725.1-201ENST00000438252 379 ntBASIC20.1■□□□□ 0.81
USF1P22415 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.1■□□□□ 0.81
USF1P22415 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
USF1P22415 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USF1P22415 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
USF1P22415 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
USF1P22415 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
USF1P22415 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.09■□□□□ 0.81
USF1P22415 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.09■□□□□ 0.81
USF1P22415 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.09■□□□□ 0.81
USF1P22415 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.09■□□□□ 0.81
USF1P22415 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.09■□□□□ 0.81
USF1P22415 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
USF1P22415 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USF1P22415 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.08■□□□□ 0.81
USF1P22415 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USF1P22415 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
USF1P22415 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USF1P22415 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
USF1P22415 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
USF1P22415 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
USF1P22415 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.08■□□□□ 0.8
USF1P22415 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
USF1P22415 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.08■□□□□ 0.8
USF1P22415 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USF1P22415 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USF1P22415 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.07■□□□□ 0.8
USF1P22415 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.07■□□□□ 0.8
USF1P22415 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USF1P22415 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
USF1P22415 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USF1P22415 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USF1P22415 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
USF1P22415 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms