Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
TRIM49D1C9J1S8 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
TRIM49D1C9J1S8 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.88■■□□□ 1.41
TRIM49D1C9J1S8 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.88■■□□□ 1.41
TRIM49D1C9J1S8 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
TRIM49D1C9J1S8 AP003733.4-201ENST00000623785 1697 ntBASIC23.88■■□□□ 1.41
TRIM49D1C9J1S8 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
TRIM49D1C9J1S8 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
TRIM49D1C9J1S8 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.88■■□□□ 1.41
TRIM49D1C9J1S8 LTK-203ENST00000453182 2412 ntTSL 2 BASIC23.88■■□□□ 1.41
TRIM49D1C9J1S8 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
TRIM49D1C9J1S8 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.87■■□□□ 1.41
TRIM49D1C9J1S8 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.87■■□□□ 1.41
TRIM49D1C9J1S8 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
TRIM49D1C9J1S8 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.87■■□□□ 1.41
TRIM49D1C9J1S8 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
TRIM49D1C9J1S8 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
TRIM49D1C9J1S8 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
TRIM49D1C9J1S8 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.86■■□□□ 1.41
TRIM49D1C9J1S8 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TRIM49D1C9J1S8 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
TRIM49D1C9J1S8 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.86■■□□□ 1.41
TRIM49D1C9J1S8 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.86■■□□□ 1.41
TRIM49D1C9J1S8 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TRIM49D1C9J1S8 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TRIM49D1C9J1S8 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.86■■□□□ 1.41
TRIM49D1C9J1S8 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TRIM49D1C9J1S8 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRIM49D1C9J1S8 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
TRIM49D1C9J1S8 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.84■■□□□ 1.41
TRIM49D1C9J1S8 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
TRIM49D1C9J1S8 AC126177.7-201ENST00000547904 679 ntBASIC23.84■■□□□ 1.41
TRIM49D1C9J1S8 CR559946.2-201ENST00000623684 991 ntBASIC23.84■■□□□ 1.41
TRIM49D1C9J1S8 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
TRIM49D1C9J1S8 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TRIM49D1C9J1S8 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.83■■□□□ 1.41
TRIM49D1C9J1S8 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.83■■□□□ 1.41
TRIM49D1C9J1S8 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.83■■□□□ 1.41
TRIM49D1C9J1S8 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
TRIM49D1C9J1S8 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC23.83■■□□□ 1.41
TRIM49D1C9J1S8 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
TRIM49D1C9J1S8 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.4
TRIM49D1C9J1S8 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.4
TRIM49D1C9J1S8 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM49D1C9J1S8 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM49D1C9J1S8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM49D1C9J1S8 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.82■■□□□ 1.4
TRIM49D1C9J1S8 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM49D1C9J1S8 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
TRIM49D1C9J1S8 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
TRIM49D1C9J1S8 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM49D1C9J1S8 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM49D1C9J1S8 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.81■■□□□ 1.4
TRIM49D1C9J1S8 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM49D1C9J1S8 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
TRIM49D1C9J1S8 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
TRIM49D1C9J1S8 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
TRIM49D1C9J1S8 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.81■■□□□ 1.4
TRIM49D1C9J1S8 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM49D1C9J1S8 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM49D1C9J1S8 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM49D1C9J1S8 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM49D1C9J1S8 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM49D1C9J1S8 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM49D1C9J1S8 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
TRIM49D1C9J1S8 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM49D1C9J1S8 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM49D1C9J1S8 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM49D1C9J1S8 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM49D1C9J1S8 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
TRIM49D1C9J1S8 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM49D1C9J1S8 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.78■■□□□ 1.4
TRIM49D1C9J1S8 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
TRIM49D1C9J1S8 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM49D1C9J1S8 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM49D1C9J1S8 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
TRIM49D1C9J1S8 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.77■■□□□ 1.4
TRIM49D1C9J1S8 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
TRIM49D1C9J1S8 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
TRIM49D1C9J1S8 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.76■■□□□ 1.39
TRIM49D1C9J1S8 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
TRIM49D1C9J1S8 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.75■■□□□ 1.39
TRIM49D1C9J1S8 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.75■■□□□ 1.39
TRIM49D1C9J1S8 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
TRIM49D1C9J1S8 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
TRIM49D1C9J1S8 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
TRIM49D1C9J1S8 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms