Protein–RNA interactions for Protein: A2RU48

SMCO3, Single-pass membrane and coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3A2RU48 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMCO3A2RU48 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMCO3A2RU48 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC19.22■□□□□ 0.67
SMCO3A2RU48 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC19.22■□□□□ 0.67
SMCO3A2RU48 CLDN5-201ENST00000403084 2357 ntBASIC19.22■□□□□ 0.67
SMCO3A2RU48 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMCO3A2RU48 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMCO3A2RU48 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SMCO3A2RU48 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMCO3A2RU48 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMCO3A2RU48 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMCO3A2RU48 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMCO3A2RU48 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMCO3A2RU48 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC19.21■□□□□ 0.67
SMCO3A2RU48 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.21■□□□□ 0.67
SMCO3A2RU48 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.21■□□□□ 0.67
SMCO3A2RU48 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMCO3A2RU48 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMCO3A2RU48 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMCO3A2RU48 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMCO3A2RU48 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMCO3A2RU48 AC022211.4-201ENST00000625094 2161 ntBASIC19.2■□□□□ 0.66
SMCO3A2RU48 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMCO3A2RU48 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMCO3A2RU48 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMCO3A2RU48 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMCO3A2RU48 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC19.2■□□□□ 0.66
SMCO3A2RU48 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMCO3A2RU48 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMCO3A2RU48 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SMCO3A2RU48 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SMCO3A2RU48 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMCO3A2RU48 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMCO3A2RU48 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMCO3A2RU48 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMCO3A2RU48 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.19■□□□□ 0.66
SMCO3A2RU48 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMCO3A2RU48 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC19.19■□□□□ 0.66
SMCO3A2RU48 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMCO3A2RU48 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMCO3A2RU48 AC044849.2-201ENST00000606596 710 ntBASIC19.19■□□□□ 0.66
SMCO3A2RU48 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMCO3A2RU48 AC087741.3-201ENST00000624270 1347 ntBASIC19.19■□□□□ 0.66
SMCO3A2RU48 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SMCO3A2RU48 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMCO3A2RU48 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMCO3A2RU48 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMCO3A2RU48 AC138932.3-201ENST00000567634 1902 ntBASIC19.18■□□□□ 0.66
SMCO3A2RU48 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMCO3A2RU48 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SMCO3A2RU48 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMCO3A2RU48 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.18■□□□□ 0.66
SMCO3A2RU48 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SMCO3A2RU48 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.17■□□□□ 0.66
SMCO3A2RU48 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SMCO3A2RU48 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.17■□□□□ 0.66
SMCO3A2RU48 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMCO3A2RU48 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SMCO3A2RU48 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC19.17■□□□□ 0.66
SMCO3A2RU48 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMCO3A2RU48 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMCO3A2RU48 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
SMCO3A2RU48 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMCO3A2RU48 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.17■□□□□ 0.66
SMCO3A2RU48 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMCO3A2RU48 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMCO3A2RU48 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMCO3A2RU48 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.17■□□□□ 0.66
SMCO3A2RU48 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMCO3A2RU48 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SMCO3A2RU48 AC079834.2-201ENST00000609776 1949 ntBASIC19.16■□□□□ 0.66
SMCO3A2RU48 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.16■□□□□ 0.66
SMCO3A2RU48 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMCO3A2RU48 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMCO3A2RU48 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMCO3A2RU48 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMCO3A2RU48 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.16■□□□□ 0.66
SMCO3A2RU48 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.15■□□□□ 0.66
SMCO3A2RU48 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMCO3A2RU48 BOD1-206ENST00000480951 814 ntTSL 2 BASIC19.15■□□□□ 0.66
SMCO3A2RU48 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMCO3A2RU48 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SMCO3A2RU48 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMCO3A2RU48 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
SMCO3A2RU48 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SMCO3A2RU48 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.66
SMCO3A2RU48 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMCO3A2RU48 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMCO3A2RU48 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMCO3A2RU48 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMCO3A2RU48 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SMCO3A2RU48 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMCO3A2RU48 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.14■□□□□ 0.65
SMCO3A2RU48 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMCO3A2RU48 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMCO3A2RU48 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SMCO3A2RU48 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SMCO3A2RU48 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SMCO3A2RU48 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC19.13■□□□□ 0.65
SMCO3A2RU48 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 160.4 ms