Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 PRELID1P1-202ENST00000567272 903 ntBASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 AL732292.2-201ENST00000609649 430 ntBASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC39Q9UFE4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 DBET-201ENST00000630918 3363 ntBASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 KRT18P31-201ENST00000506277 1292 ntBASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 AC106795.1-205ENST00000512851 1056 ntBASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 AC097637.2-201ENST00000624096 1997 ntBASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 GPR89P-201ENST00000407924 1495 ntBASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 AC126177.1-201ENST00000547829 2218 ntBASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC39Q9UFE4 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC19.39■□□□□ 0.7
CCDC39Q9UFE4 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC39Q9UFE4 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC39Q9UFE4 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC39Q9UFE4 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 RBM17P3-201ENST00000417687 1192 ntBASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 TSPY19P-201ENST00000418461 509 ntBASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 TSPY18P-201ENST00000441642 509 ntBASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 AC091304.2-201ENST00000564639 760 ntBASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 AC099063.4-201ENST00000641099 1602 ntBASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms