Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 AC141257.4-201ENST00000634557 245 ntBASIC16.25■□□□□ 0.19
NDE1Q9NXR1 AC136944.6-201ENST00000634818 245 ntBASIC16.25■□□□□ 0.19
NDE1Q9NXR1 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 KRT8P10-201ENST00000450021 1447 ntBASIC16.25■□□□□ 0.19
NDE1Q9NXR1 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 AL603832.2-201ENST00000566195 2125 ntBASIC16.25■□□□□ 0.19
NDE1Q9NXR1 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NDE1Q9NXR1 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 AC013268.4-201ENST00000637413 2228 ntBASIC16.24■□□□□ 0.19
NDE1Q9NXR1 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.24■□□□□ 0.19
NDE1Q9NXR1 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 AL353593.2-201ENST00000602529 1483 ntBASIC16.23■□□□□ 0.19
NDE1Q9NXR1 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 AC003669.1-201ENST00000334569 611 ntBASIC16.23■□□□□ 0.19
NDE1Q9NXR1 MIR718-201ENST00000390190 70 ntBASIC16.23■□□□□ 0.19
NDE1Q9NXR1 FAM220CP-201ENST00000395253 831 ntBASIC16.23■□□□□ 0.19
NDE1Q9NXR1 AL158047.1-201ENST00000445918 881 ntBASIC16.23■□□□□ 0.19
NDE1Q9NXR1 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.23■□□□□ 0.19
NDE1Q9NXR1 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms