Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 AC236430.1-201ENST00000402231 743 ntBASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 SPTSSB-204ENST00000617024 1292 ntBASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 AL031731.1-201ENST00000642131 2094 ntBASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 AC105020.1-201ENST00000435356 2205 ntBASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
PAAF1Q9BRP4 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.71■□□□□ 0.42
PAAF1Q9BRP4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
PAAF1Q9BRP4 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 RN7SL204P-201ENST00000582831 262 ntBASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 AL139011.1-202ENST00000642063 584 ntBASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PAAF1Q9BRP4 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 HLA-H-201ENST00000383620 1096 ntBASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 AC002472.2-201ENST00000442739 958 ntBASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 TSPY16P-201ENST00000449843 468 ntBASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 AC007967.4-201ENST00000614700 386 ntBASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 SPDYE12P-201ENST00000618416 771 ntBASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PAAF1Q9BRP4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms