Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP28Q96RU2 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.12■□□□□ 0.65
USP28Q96RU2 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.12■□□□□ 0.65
USP28Q96RU2 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.12■□□□□ 0.65
USP28Q96RU2 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.12■□□□□ 0.65
USP28Q96RU2 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.12■□□□□ 0.65
USP28Q96RU2 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
USP28Q96RU2 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP28Q96RU2 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP28Q96RU2 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC19.12■□□□□ 0.65
USP28Q96RU2 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.12■□□□□ 0.65
USP28Q96RU2 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
USP28Q96RU2 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.12■□□□□ 0.65
USP28Q96RU2 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
USP28Q96RU2 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
USP28Q96RU2 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.11■□□□□ 0.65
USP28Q96RU2 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.11■□□□□ 0.65
USP28Q96RU2 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
USP28Q96RU2 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC19.11■□□□□ 0.65
USP28Q96RU2 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.11■□□□□ 0.65
USP28Q96RU2 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.11■□□□□ 0.65
USP28Q96RU2 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.11■□□□□ 0.65
USP28Q96RU2 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
USP28Q96RU2 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.11■□□□□ 0.65
USP28Q96RU2 RNPS1P1-201ENST00000507437 918 ntBASIC19.11■□□□□ 0.65
USP28Q96RU2 AC136632.2-201ENST00000512891 861 ntBASIC19.11■□□□□ 0.65
USP28Q96RU2 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.11■□□□□ 0.65
USP28Q96RU2 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.11■□□□□ 0.65
USP28Q96RU2 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.11■□□□□ 0.65
USP28Q96RU2 GPAA1P2-202ENST00000606848 1787 ntBASIC19.11■□□□□ 0.65
USP28Q96RU2 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.11■□□□□ 0.65
USP28Q96RU2 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.11■□□□□ 0.65
USP28Q96RU2 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP28Q96RU2 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.1■□□□□ 0.65
USP28Q96RU2 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
USP28Q96RU2 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.1■□□□□ 0.65
USP28Q96RU2 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.1■□□□□ 0.65
USP28Q96RU2 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
USP28Q96RU2 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.1■□□□□ 0.65
USP28Q96RU2 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.1■□□□□ 0.65
USP28Q96RU2 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.1■□□□□ 0.65
USP28Q96RU2 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.1■□□□□ 0.65
USP28Q96RU2 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.1■□□□□ 0.65
USP28Q96RU2 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.1■□□□□ 0.65
USP28Q96RU2 AC012640.2-201ENST00000561606 901 ntBASIC19.1■□□□□ 0.65
USP28Q96RU2 AC008667.4-201ENST00000607370 168 ntBASIC19.1■□□□□ 0.65
USP28Q96RU2 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.1■□□□□ 0.65
USP28Q96RU2 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
USP28Q96RU2 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC19.1■□□□□ 0.65
USP28Q96RU2 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
USP28Q96RU2 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.1■□□□□ 0.65
USP28Q96RU2 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC19.1■□□□□ 0.65
USP28Q96RU2 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.1■□□□□ 0.65
USP28Q96RU2 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.1■□□□□ 0.65
USP28Q96RU2 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
USP28Q96RU2 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP28Q96RU2 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.1■□□□□ 0.65
USP28Q96RU2 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP28Q96RU2 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.09■□□□□ 0.65
USP28Q96RU2 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP28Q96RU2 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
USP28Q96RU2 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP28Q96RU2 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.09■□□□□ 0.65
USP28Q96RU2 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.09■□□□□ 0.65
USP28Q96RU2 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP28Q96RU2 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.09■□□□□ 0.65
USP28Q96RU2 AC018712.1-201ENST00000455767 687 ntBASIC19.09■□□□□ 0.65
USP28Q96RU2 EMBP1-201ENST00000458200 901 ntBASIC19.09■□□□□ 0.65
USP28Q96RU2 KRT18P56-201ENST00000507275 550 ntBASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms