Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 AL355306.1-201ENST00000415580 579 ntBASIC17.2■□□□□ 0.34
RPRD1AQ96P16 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 AC092474.2-201ENST00000424288 719 ntBASIC17.2■□□□□ 0.34
RPRD1AQ96P16 AL671277.1-201ENST00000429656 993 ntBASIC17.2■□□□□ 0.34
RPRD1AQ96P16 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 AL139011.1-202ENST00000642063 584 ntBASIC17.2■□□□□ 0.34
RPRD1AQ96P16 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 AD000864.1-201ENST00000624076 2295 ntBASIC17.2■□□□□ 0.34
RPRD1AQ96P16 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 AC078925.2-201ENST00000624013 1973 ntBASIC17.2■□□□□ 0.34
RPRD1AQ96P16 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.2■□□□□ 0.34
RPRD1AQ96P16 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 RPS8P6-201ENST00000426177 609 ntBASIC17.19■□□□□ 0.34
RPRD1AQ96P16 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.19■□□□□ 0.34
RPRD1AQ96P16 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.18■□□□□ 0.34
RPRD1AQ96P16 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms