Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC28AQ8IWP9 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC28AQ8IWP9 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 SRP19-202ENST00000445150 833 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 F2R-202ENST00000505600 442 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 AP003680.1-201ENST00000598970 3660 ntBASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 AC010491.1-201ENST00000563101 2797 ntBASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC28AQ8IWP9 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 AL109659.2-201ENST00000606809 1674 ntBASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 KRT16P5-201ENST00000455284 522 ntBASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 AC110285.5-201ENST00000611501 352 ntBASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 Six3os1_6.1-201ENST00000620790 196 ntBASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 AC232323.1-201ENST00000540724 2099 ntBASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 REXO1L5P-201ENST00000622260 2098 ntBASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 AP005117.1-202ENST00000581724 1908 ntBASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC28AQ8IWP9 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC28AQ8IWP9 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms