Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
USP39Q53GS9 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.99■□□□□ 0.31
USP39Q53GS9 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.99■□□□□ 0.31
USP39Q53GS9 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.99■□□□□ 0.31
USP39Q53GS9 FAM207CP-201ENST00000443486 507 ntBASIC16.99■□□□□ 0.31
USP39Q53GS9 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
USP39Q53GS9 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.99■□□□□ 0.31
USP39Q53GS9 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.99■□□□□ 0.31
USP39Q53GS9 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.99■□□□□ 0.31
USP39Q53GS9 AC026150.2-201ENST00000564693 1156 ntBASIC16.99■□□□□ 0.31
USP39Q53GS9 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.99■□□□□ 0.31
USP39Q53GS9 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.99■□□□□ 0.31
USP39Q53GS9 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 AL009183.1-201ENST00000603760 355 ntBASIC16.99■□□□□ 0.31
USP39Q53GS9 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.99■□□□□ 0.31
USP39Q53GS9 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.99■□□□□ 0.31
USP39Q53GS9 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
USP39Q53GS9 FO538757.1-201ENST00000623083 1397 ntBASIC16.99■□□□□ 0.31
USP39Q53GS9 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.99■□□□□ 0.31
USP39Q53GS9 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
USP39Q53GS9 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USP39Q53GS9 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.98■□□□□ 0.31
USP39Q53GS9 OR6D1P-203ENST00000641209 4860 ntBASIC16.98■□□□□ 0.31
USP39Q53GS9 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.98■□□□□ 0.31
USP39Q53GS9 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.98■□□□□ 0.31
USP39Q53GS9 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
USP39Q53GS9 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.98■□□□□ 0.31
USP39Q53GS9 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
USP39Q53GS9 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.98■□□□□ 0.31
USP39Q53GS9 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.98■□□□□ 0.31
USP39Q53GS9 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.98■□□□□ 0.31
USP39Q53GS9 TREML5P-201ENST00000421694 576 ntBASIC16.98■□□□□ 0.31
USP39Q53GS9 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.98■□□□□ 0.31
USP39Q53GS9 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
USP39Q53GS9 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
USP39Q53GS9 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
USP39Q53GS9 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.98■□□□□ 0.31
USP39Q53GS9 AC012645.4-201ENST00000610691 1061 ntBASIC16.98■□□□□ 0.31
USP39Q53GS9 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
USP39Q53GS9 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
USP39Q53GS9 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.98■□□□□ 0.31
USP39Q53GS9 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
USP39Q53GS9 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
USP39Q53GS9 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.98■□□□□ 0.31
USP39Q53GS9 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.98■□□□□ 0.31
USP39Q53GS9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
USP39Q53GS9 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.98■□□□□ 0.31
USP39Q53GS9 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
USP39Q53GS9 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
USP39Q53GS9 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
USP39Q53GS9 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.98■□□□□ 0.31
USP39Q53GS9 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.98■□□□□ 0.31
USP39Q53GS9 AC022211.2-201ENST00000585075 2527 ntBASIC16.98■□□□□ 0.31
USP39Q53GS9 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
USP39Q53GS9 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.98■□□□□ 0.31
USP39Q53GS9 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
USP39Q53GS9 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.97■□□□□ 0.31
USP39Q53GS9 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.97■□□□□ 0.31
USP39Q53GS9 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
USP39Q53GS9 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.97■□□□□ 0.31
USP39Q53GS9 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.97■□□□□ 0.31
USP39Q53GS9 SLC25A39P2-201ENST00000537614 270 ntBASIC16.97■□□□□ 0.31
USP39Q53GS9 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.97■□□□□ 0.31
USP39Q53GS9 AC005225.4-201ENST00000557330 545 ntBASIC16.97■□□□□ 0.31
USP39Q53GS9 LINC01225-203ENST00000563550 1244 ntBASIC16.97■□□□□ 0.31
USP39Q53GS9 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.97■□□□□ 0.31
USP39Q53GS9 AL390754.1-201ENST00000619088 582 ntBASIC16.97■□□□□ 0.31
USP39Q53GS9 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.97■□□□□ 0.31
USP39Q53GS9 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
USP39Q53GS9 AC008677.1-201ENST00000519230 1561 ntBASIC16.97■□□□□ 0.31
USP39Q53GS9 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
USP39Q53GS9 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
USP39Q53GS9 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.97■□□□□ 0.31
USP39Q53GS9 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
USP39Q53GS9 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms