Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.26■□□□□ 0.19
HNF4AP41235 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 AC008667.4-201ENST00000607370 168 ntBASIC16.26■□□□□ 0.19
HNF4AP41235 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.26■□□□□ 0.19
HNF4AP41235 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.26■□□□□ 0.19
HNF4AP41235 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.26■□□□□ 0.19
HNF4AP41235 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
HNF4AP41235 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HNF4AP41235 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.26■□□□□ 0.19
HNF4AP41235 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HNF4AP41235 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.26■□□□□ 0.19
HNF4AP41235 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.25■□□□□ 0.19
HNF4AP41235 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HNF4AP41235 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
HNF4AP41235 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
HNF4AP41235 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.25■□□□□ 0.19
HNF4AP41235 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.25■□□□□ 0.19
HNF4AP41235 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.25■□□□□ 0.19
HNF4AP41235 SLC25A6P2-201ENST00000497974 877 ntBASIC16.25■□□□□ 0.19
HNF4AP41235 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.25■□□□□ 0.19
HNF4AP41235 MPDU1-223ENST00000582151 728 ntBASIC16.25■□□□□ 0.19
HNF4AP41235 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.25■□□□□ 0.19
HNF4AP41235 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.25■□□□□ 0.19
HNF4AP41235 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.25■□□□□ 0.19
HNF4AP41235 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
HNF4AP41235 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
HNF4AP41235 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.25■□□□□ 0.19
HNF4AP41235 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.25■□□□□ 0.19
HNF4AP41235 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.25■□□□□ 0.19
HNF4AP41235 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.25■□□□□ 0.19
HNF4AP41235 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HNF4AP41235 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HNF4AP41235 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 AC129492.6-201ENST00000611383 1305 ntBASIC16.24■□□□□ 0.19
HNF4AP41235 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.24■□□□□ 0.19
HNF4AP41235 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.24■□□□□ 0.19
HNF4AP41235 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.24■□□□□ 0.19
HNF4AP41235 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
HNF4AP41235 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.24■□□□□ 0.19
HNF4AP41235 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.24■□□□□ 0.19
HNF4AP41235 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.24■□□□□ 0.19
HNF4AP41235 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.24■□□□□ 0.19
HNF4AP41235 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.24■□□□□ 0.19
HNF4AP41235 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.24■□□□□ 0.19
HNF4AP41235 MIR4492-201ENST00000581627 80 ntBASIC16.24■□□□□ 0.19
HNF4AP41235 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.24■□□□□ 0.19
HNF4AP41235 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 AC004790.2-201ENST00000623588 572 ntBASIC16.24■□□□□ 0.19
HNF4AP41235 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HNF4AP41235 AC092171.3-201ENST00000610122 2651 ntBASIC16.24■□□□□ 0.19
HNF4AP41235 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
HNF4AP41235 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.24■□□□□ 0.19
HNF4AP41235 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.24■□□□□ 0.19
HNF4AP41235 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HNF4AP41235 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HNF4AP41235 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HNF4AP41235 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HNF4AP41235 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HNF4AP41235 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HNF4AP41235 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
HNF4AP41235 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HNF4AP41235 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms