Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
SGCEO43556 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC14.86□□□□□ -0.03
SGCEO43556 KRT18P67-201ENST00000432816 1264 ntBASIC14.86□□□□□ -0.03
SGCEO43556 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC14.86□□□□□ -0.03
SGCEO43556 CYGB-205ENST00000590175 830 ntTSL 3 BASIC14.86□□□□□ -0.03
SGCEO43556 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
SGCEO43556 MIR1199-201ENST00000621445 119 ntBASIC14.86□□□□□ -0.03
SGCEO43556 AL805961.1-202ENST00000641562 540 ntBASIC14.86□□□□□ -0.03
SGCEO43556 AF228730.7-201ENST00000641842 219 ntBASIC14.86□□□□□ -0.03
SGCEO43556 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.86□□□□□ -0.03
SGCEO43556 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.86□□□□□ -0.03
SGCEO43556 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.86□□□□□ -0.03
SGCEO43556 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
SGCEO43556 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SGCEO43556 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
SGCEO43556 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.85□□□□□ -0.03
SGCEO43556 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 RNF216P1-203ENST00000404404 2427 ntBASIC14.85□□□□□ -0.03
SGCEO43556 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
SGCEO43556 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SGCEO43556 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 AC005052.1-201ENST00000625181 2492 ntBASIC14.85□□□□□ -0.03
SGCEO43556 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
SGCEO43556 RPS2P28-201ENST00000314255 741 ntBASIC14.85□□□□□ -0.03
SGCEO43556 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
SGCEO43556 INIP-202ENST00000374236 874 ntTSL 2 BASIC14.85□□□□□ -0.03
SGCEO43556 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
SGCEO43556 PAWRP1-201ENST00000451083 565 ntBASIC14.85□□□□□ -0.03
SGCEO43556 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.85□□□□□ -0.03
SGCEO43556 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
SGCEO43556 PP7080-204ENST00000510714 601 ntTSL 3 BASIC14.85□□□□□ -0.03
SGCEO43556 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
SGCEO43556 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC14.85□□□□□ -0.03
SGCEO43556 KRT126P-201ENST00000549467 1181 ntBASIC14.85□□□□□ -0.03
SGCEO43556 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.85□□□□□ -0.03
SGCEO43556 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.85□□□□□ -0.03
SGCEO43556 AC008735.5-201ENST00000623544 497 ntBASIC14.85□□□□□ -0.03
SGCEO43556 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.85□□□□□ -0.03
SGCEO43556 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.85□□□□□ -0.03
SGCEO43556 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
SGCEO43556 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.85□□□□□ -0.03
SGCEO43556 AC078925.2-201ENST00000624013 1973 ntBASIC14.85□□□□□ -0.03
SGCEO43556 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
SGCEO43556 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.85□□□□□ -0.03
SGCEO43556 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC14.85□□□□□ -0.03
SGCEO43556 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
SGCEO43556 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.85□□□□□ -0.03
SGCEO43556 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SGCEO43556 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SGCEO43556 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
SGCEO43556 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SGCEO43556 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.84□□□□□ -0.03
SGCEO43556 KRT8P49-201ENST00000604166 1432 ntBASIC14.84□□□□□ -0.03
SGCEO43556 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.84□□□□□ -0.03
SGCEO43556 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.84□□□□□ -0.03
SGCEO43556 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
SGCEO43556 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SGCEO43556 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SGCEO43556 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
SGCEO43556 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
SGCEO43556 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
SGCEO43556 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
SGCEO43556 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms