Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 PRKXP1-201ENST00000561423 1122 ntBASIC16.67■□□□□ 0.26
TTC28Q96AY4 AL139011.1-202ENST00000642063 584 ntBASIC16.67■□□□□ 0.26
TTC28Q96AY4 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 EEF1DP6-201ENST00000449232 372 ntBASIC16.67■□□□□ 0.26
TTC28Q96AY4 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 AC132192.2-201ENST00000596206 1147 ntBASIC16.67■□□□□ 0.26
TTC28Q96AY4 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC16.67■□□□□ 0.26
TTC28Q96AY4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TTC28Q96AY4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TTC28Q96AY4 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TTC28Q96AY4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TTC28Q96AY4 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TTC28Q96AY4 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TTC28Q96AY4 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TTC28Q96AY4 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.66■□□□□ 0.26
TTC28Q96AY4 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.66■□□□□ 0.26
TTC28Q96AY4 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.66■□□□□ 0.26
TTC28Q96AY4 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
TTC28Q96AY4 AC026979.3-201ENST00000607315 403 ntBASIC16.66■□□□□ 0.26
TTC28Q96AY4 RN7SL736P-201ENST00000613111 269 ntBASIC16.66■□□□□ 0.26
TTC28Q96AY4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.66■□□□□ 0.26
TTC28Q96AY4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
TTC28Q96AY4 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TTC28Q96AY4 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.66■□□□□ 0.26
TTC28Q96AY4 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
TTC28Q96AY4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TTC28Q96AY4 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
TTC28Q96AY4 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TTC28Q96AY4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.66■□□□□ 0.26
TTC28Q96AY4 AC015818.8-201ENST00000587907 1519 ntBASIC16.66■□□□□ 0.26
TTC28Q96AY4 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 RNA5SP410-201ENST00000516285 106 ntBASIC16.65■□□□□ 0.26
TTC28Q96AY4 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 AC124283.3-201ENST00000570869 594 ntBASIC16.65■□□□□ 0.26
TTC28Q96AY4 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 AP000346.4-201ENST00000614827 381 ntBASIC16.65■□□□□ 0.26
TTC28Q96AY4 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 AC020763.4-201ENST00000623414 4170 ntBASIC16.65■□□□□ 0.26
TTC28Q96AY4 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 CYP46A4P-201ENST00000414953 267 ntBASIC16.65■□□□□ 0.26
TTC28Q96AY4 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 AC126915.1-201ENST00000522847 1038 ntBASIC16.65■□□□□ 0.26
TTC28Q96AY4 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TTC28Q96AY4 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.65■□□□□ 0.26
TTC28Q96AY4 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.64■□□□□ 0.26
TTC28Q96AY4 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.64■□□□□ 0.26
TTC28Q96AY4 PGAM1P5-201ENST00000548011 764 ntBASIC16.64■□□□□ 0.26
TTC28Q96AY4 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.64■□□□□ 0.26
TTC28Q96AY4 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.64■□□□□ 0.26
TTC28Q96AY4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
TTC28Q96AY4 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TTC28Q96AY4 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TTC28Q96AY4 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TTC28Q96AY4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TTC28Q96AY4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.64■□□□□ 0.25
TTC28Q96AY4 AC134312.5-201ENST00000568031 1313 ntBASIC16.64■□□□□ 0.25
TTC28Q96AY4 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TTC28Q96AY4 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TTC28Q96AY4 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TTC28Q96AY4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
TTC28Q96AY4 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TTC28Q96AY4 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TTC28Q96AY4 AC093433.1-201ENST00000458048 571 ntBASIC16.64■□□□□ 0.25
TTC28Q96AY4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms