Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 AL121761.2-201ENST00000598007 1648 ntBASIC15.55■□□□□ 0.08
BEST3Q8N1M1 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 ADH5P3-201ENST00000433842 1137 ntBASIC15.55■□□□□ 0.08
BEST3Q8N1M1 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
BEST3Q8N1M1 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 CROCCP2-202ENST00000412962 2773 ntBASIC15.54■□□□□ 0.08
BEST3Q8N1M1 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 TOP3BP1-201ENST00000420768 1380 ntBASIC15.54■□□□□ 0.08
BEST3Q8N1M1 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 TSEN15P1-201ENST00000423257 515 ntBASIC15.54■□□□□ 0.08
BEST3Q8N1M1 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 AL671277.1-201ENST00000429656 993 ntBASIC15.54■□□□□ 0.08
BEST3Q8N1M1 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
BEST3Q8N1M1 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.53■□□□□ 0.08
BEST3Q8N1M1 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.53■□□□□ 0.08
BEST3Q8N1M1 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms