Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.16■□□□□ 0.18
PCDH1Q08174 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PCDH1Q08174 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.16■□□□□ 0.18
PCDH1Q08174 SLC25A6P4-201ENST00000586535 553 ntBASIC16.16■□□□□ 0.18
PCDH1Q08174 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.16■□□□□ 0.18
PCDH1Q08174 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.16■□□□□ 0.18
PCDH1Q08174 AC004790.2-201ENST00000623588 572 ntBASIC16.16■□□□□ 0.18
PCDH1Q08174 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
PCDH1Q08174 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDH1Q08174 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.16■□□□□ 0.18
PCDH1Q08174 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDH1Q08174 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PCDH1Q08174 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDH1Q08174 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PCDH1Q08174 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDH1Q08174 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PCDH1Q08174 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDH1Q08174 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PCDH1Q08174 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PCDH1Q08174 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.16■□□□□ 0.18
PCDH1Q08174 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDH1Q08174 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
PCDH1Q08174 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
PCDH1Q08174 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PCDH1Q08174 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDH1Q08174 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDH1Q08174 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.15■□□□□ 0.18
PCDH1Q08174 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PCDH1Q08174 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.15■□□□□ 0.18
PCDH1Q08174 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
PCDH1Q08174 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PCDH1Q08174 MRPL3P1-201ENST00000400109 1033 ntBASIC16.15■□□□□ 0.18
PCDH1Q08174 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PCDH1Q08174 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PCDH1Q08174 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDH1Q08174 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.15■□□□□ 0.18
PCDH1Q08174 IGHV3-22-201ENST00000520721 359 ntBASIC16.15■□□□□ 0.18
PCDH1Q08174 ACTL9-202ENST00000612068 1252 ntBASIC16.15■□□□□ 0.18
PCDH1Q08174 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PCDH1Q08174 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.15■□□□□ 0.18
PCDH1Q08174 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.15■□□□□ 0.18
PCDH1Q08174 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PCDH1Q08174 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDH1Q08174 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.15■□□□□ 0.18
PCDH1Q08174 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
PCDH1Q08174 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.15■□□□□ 0.18
PCDH1Q08174 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDH1Q08174 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDH1Q08174 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.15■□□□□ 0.18
PCDH1Q08174 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
PCDH1Q08174 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.14■□□□□ 0.18
PCDH1Q08174 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
PCDH1Q08174 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDH1Q08174 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
PCDH1Q08174 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 GGT4P-201ENST00000623672 1708 ntBASIC16.14■□□□□ 0.17
PCDH1Q08174 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
PCDH1Q08174 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.14■□□□□ 0.17
PCDH1Q08174 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PCDH1Q08174 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
PCDH1Q08174 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDH1Q08174 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.14■□□□□ 0.17
PCDH1Q08174 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.14■□□□□ 0.17
PCDH1Q08174 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDH1Q08174 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.14■□□□□ 0.17
PCDH1Q08174 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDH1Q08174 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDH1Q08174 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDH1Q08174 AL049840.3-201ENST00000602669 611 ntBASIC16.14■□□□□ 0.17
PCDH1Q08174 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.14■□□□□ 0.17
PCDH1Q08174 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.14■□□□□ 0.17
PCDH1Q08174 AC116407.3-201ENST00000623905 1129 ntBASIC16.14■□□□□ 0.17
PCDH1Q08174 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDH1Q08174 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.14■□□□□ 0.17
PCDH1Q08174 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDH1Q08174 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH1Q08174 AL671710.1-201ENST00000610245 2349 ntBASIC16.13■□□□□ 0.17
PCDH1Q08174 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH1Q08174 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PCDH1Q08174 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.13■□□□□ 0.17
PCDH1Q08174 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCDH1Q08174 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms