Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
FOXA3P55318 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC12.63□□□□□ -0.39
FOXA3P55318 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 INGX-201ENST00000359239 846 ntBASIC12.63□□□□□ -0.39
FOXA3P55318 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
FOXA3P55318 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
FOXA3P55318 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC12.63□□□□□ -0.39
FOXA3P55318 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC12.63□□□□□ -0.39
FOXA3P55318 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC12.63□□□□□ -0.39
FOXA3P55318 REXO2-216ENST00000544196 452 ntTSL 3 BASIC12.63□□□□□ -0.39
FOXA3P55318 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC12.63□□□□□ -0.39
FOXA3P55318 AC109462.3-201ENST00000573934 613 ntBASIC12.63□□□□□ -0.39
FOXA3P55318 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC12.63□□□□□ -0.39
FOXA3P55318 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC12.63□□□□□ -0.39
FOXA3P55318 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC12.63□□□□□ -0.39
FOXA3P55318 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
FOXA3P55318 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
FOXA3P55318 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 PCDHA3-202ENST00000532566 4594 ntBASIC12.62□□□□□ -0.39
FOXA3P55318 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
FOXA3P55318 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
FOXA3P55318 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA3P55318 TNRC18P2-201ENST00000417666 2714 ntBASIC12.62□□□□□ -0.39
FOXA3P55318 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA3P55318 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
FOXA3P55318 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA3P55318 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA3P55318 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
FOXA3P55318 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA3P55318 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA3P55318 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA3P55318 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 UNC93B2-201ENST00000285383 730 ntBASIC12.62□□□□□ -0.39
FOXA3P55318 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
FOXA3P55318 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
FOXA3P55318 RPS2P55-201ENST00000397318 883 ntBASIC12.62□□□□□ -0.39
FOXA3P55318 AL390955.1-201ENST00000428694 934 ntBASIC12.62□□□□□ -0.39
FOXA3P55318 SRP19-202ENST00000445150 833 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA3P55318 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
FOXA3P55318 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA3P55318 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC12.62□□□□□ -0.39
FOXA3P55318 MIR4651-201ENST00000582622 73 ntBASIC12.62□□□□□ -0.39
FOXA3P55318 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 GCK-202ENST00000345378 2421 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA3P55318 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC12.62□□□□□ -0.39
FOXA3P55318 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
FOXA3P55318 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
FOXA3P55318 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC12.62□□□□□ -0.39
FOXA3P55318 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
FOXA3P55318 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC12.61□□□□□ -0.39
FOXA3P55318 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms