Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
NKX2-1P43699 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
NKX2-1P43699 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
NKX2-1P43699 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
NKX2-1P43699 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
NKX2-1P43699 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX2-1P43699 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
NKX2-1P43699 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC13.77□□□□□ -0.21
NKX2-1P43699 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.77□□□□□ -0.21
NKX2-1P43699 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX2-1P43699 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
NKX2-1P43699 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX2-1P43699 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC13.77□□□□□ -0.21
NKX2-1P43699 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC13.77□□□□□ -0.21
NKX2-1P43699 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
NKX2-1P43699 SPEG-225ENST00000617028 815 ntTSL 5 BASIC13.77□□□□□ -0.21
NKX2-1P43699 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
NKX2-1P43699 AL021920.2-201ENST00000624828 1351 ntBASIC13.77□□□□□ -0.21
NKX2-1P43699 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
NKX2-1P43699 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC13.77□□□□□ -0.21
NKX2-1P43699 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NKX2-1P43699 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
NKX2-1P43699 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
NKX2-1P43699 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
NKX2-1P43699 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC13.76□□□□□ -0.21
NKX2-1P43699 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
NKX2-1P43699 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
NKX2-1P43699 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-1P43699 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13.76□□□□□ -0.21
NKX2-1P43699 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC13.76□□□□□ -0.21
NKX2-1P43699 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-1P43699 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
NKX2-1P43699 AC144831.1-201ENST00000573312 2656 ntBASIC13.76□□□□□ -0.21
NKX2-1P43699 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
NKX2-1P43699 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 MIR662-201ENST00000384847 95 ntBASIC13.76□□□□□ -0.21
NKX2-1P43699 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC13.76□□□□□ -0.21
NKX2-1P43699 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-1P43699 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-1P43699 AC145285.6-201ENST00000604632 637 ntBASIC13.76□□□□□ -0.21
NKX2-1P43699 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
NKX2-1P43699 AC073912.3-201ENST00000624414 853 ntBASIC13.76□□□□□ -0.21
NKX2-1P43699 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-1P43699 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC13.76□□□□□ -0.21
NKX2-1P43699 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-1P43699 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
NKX2-1P43699 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
NKX2-1P43699 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
NKX2-1P43699 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC13.76□□□□□ -0.21
NKX2-1P43699 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
NKX2-1P43699 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NKX2-1P43699 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.76□□□□□ -0.21
NKX2-1P43699 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms