Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MIR4750-201ENST00000584564 56 ntBASIC17.06■□□□□ 0.32
VCANP13611 AC008687.7-202ENST00000637404 953 ntBASIC17.06■□□□□ 0.32
VCANP13611 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.06■□□□□ 0.32
VCANP13611 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
VCANP13611 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VCANP13611 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VCANP13611 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.06■□□□□ 0.32
VCANP13611 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC17.06■□□□□ 0.32
VCANP13611 AC141586.1-203ENST00000567242 366 ntBASIC17.06■□□□□ 0.32
VCANP13611 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.06■□□□□ 0.32
VCANP13611 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.06■□□□□ 0.32
VCANP13611 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.06■□□□□ 0.32
VCANP13611 AC020914.3-201ENST00000594712 304 ntBASIC17.06■□□□□ 0.32
VCANP13611 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.06■□□□□ 0.32
VCANP13611 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
VCANP13611 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.05■□□□□ 0.32
VCANP13611 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 FTLP1-201ENST00000449155 526 ntBASIC17.05■□□□□ 0.32
VCANP13611 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.05■□□□□ 0.32
VCANP13611 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.05■□□□□ 0.32
VCANP13611 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.05■□□□□ 0.32
VCANP13611 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.05■□□□□ 0.32
VCANP13611 AL353732.1-201ENST00000569618 1459 ntBASIC17.05■□□□□ 0.32
VCANP13611 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC17.05■□□□□ 0.32
VCANP13611 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.05■□□□□ 0.32
VCANP13611 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
VCANP13611 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC17.05■□□□□ 0.32
VCANP13611 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.05■□□□□ 0.32
VCANP13611 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.05■□□□□ 0.32
VCANP13611 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
VCANP13611 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VCANP13611 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
VCANP13611 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
VCANP13611 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.05■□□□□ 0.32
VCANP13611 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
VCANP13611 AL033527.5-202ENST00000641632 1098 ntBASIC17.05■□□□□ 0.32
VCANP13611 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VCANP13611 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.04■□□□□ 0.32
VCANP13611 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
VCANP13611 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.04■□□□□ 0.32
VCANP13611 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.04■□□□□ 0.32
VCANP13611 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC17.04■□□□□ 0.32
VCANP13611 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.04■□□□□ 0.32
VCANP13611 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.04■□□□□ 0.32
VCANP13611 MAGEA5-201ENST00000446757 942 ntBASIC17.04■□□□□ 0.32
VCANP13611 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.04■□□□□ 0.32
VCANP13611 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
VCANP13611 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VCANP13611 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.03■□□□□ 0.32
VCANP13611 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VCANP13611 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
VCANP13611 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCANP13611 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCANP13611 NEFHP1-201ENST00000412845 2629 ntBASIC17.03■□□□□ 0.32
VCANP13611 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
VCANP13611 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.03■□□□□ 0.32
VCANP13611 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.03■□□□□ 0.32
VCANP13611 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.03■□□□□ 0.32
VCANP13611 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VCANP13611 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VCANP13611 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms