Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC046158.3-201ENST00000624947 2558 ntBASIC17.33■□□□□ 0.36
PCDH9Q9HC56 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 ELK2BP-201ENST00000415014 1224 ntBASIC17.33■□□□□ 0.36
PCDH9Q9HC56 KRT18P27-201ENST00000427733 1299 ntBASIC17.33■□□□□ 0.36
PCDH9Q9HC56 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 AC012640.2-201ENST00000561606 901 ntBASIC17.33■□□□□ 0.36
PCDH9Q9HC56 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH9Q9HC56 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 TOP3BP1-201ENST00000420768 1380 ntBASIC17.32■□□□□ 0.36
PCDH9Q9HC56 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 AC105339.3-201ENST00000560043 636 ntBASIC17.32■□□□□ 0.36
PCDH9Q9HC56 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 AP001005.1-201ENST00000571755 1248 ntBASIC17.32■□□□□ 0.36
PCDH9Q9HC56 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH9Q9HC56 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH9Q9HC56 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms