Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.41■□□□□ 0.38
ATG4AQ8WYN0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 TOP3BP1-201ENST00000420768 1380 ntBASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 RBM17P3-201ENST00000417687 1192 ntBASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 HYMAI-201ENST00000635591 3347 ntBASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 MTHFR-217ENST00000641820 1569 ntBASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATG4AQ8WYN0 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
ATG4AQ8WYN0 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
ATG4AQ8WYN0 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
ATG4AQ8WYN0 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
ATG4AQ8WYN0 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
ATG4AQ8WYN0 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 AL512652.2-201ENST00000625156 1716 ntBASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 PAWRP1-201ENST00000451083 565 ntBASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 AL589182.2-201ENST00000619332 1049 ntBASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 AL139011.1-202ENST00000642063 584 ntBASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATG4AQ8WYN0 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.38■□□□□ 0.37
ATG4AQ8WYN0 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms