Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 PDPK2P-202ENST00000562415 1191 ntBASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 AC099522.2-201ENST00000607001 744 ntBASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHROOM3Q8TF72 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 AC092919.2-201ENST00000623631 1645 ntBASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHROOM3Q8TF72 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 PMS2P4-201ENST00000412466 1052 ntBASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 MTDHP5-201ENST00000598980 586 ntBASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHROOM3Q8TF72 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 AC254562.1-201ENST00000417586 456 ntBASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.02■□□□□ 0.31
SHROOM3Q8TF72 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 GPAA1P2-202ENST00000606848 1787 ntBASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SHROOM3Q8TF72 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms