Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 MIR1908-201ENST00000410394 80 ntBASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AC234783.1-201ENST00000441761 496 ntBASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AC007389.4-201ENST00000454674 793 ntBASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 MIR6869-201ENST00000619434 62 ntBASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AC007431.3-201ENST00000623221 587 ntBASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 AL158212.4-201ENST00000624062 1286 ntBASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
VPS13DQ5THJ4 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 AC024267.1-201ENST00000582320 895 ntBASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 PTK7-212ENST00000476760 902 ntTSL 2 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 BTNL10-201ENST00000595971 695 ntBASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
VPS13DQ5THJ4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms