Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.67■□□□□ 0.42
COL4A4P53420 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.67■□□□□ 0.42
COL4A4P53420 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A4P53420 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
COL4A4P53420 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
COL4A4P53420 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.66■□□□□ 0.42
COL4A4P53420 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL4A4P53420 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.66■□□□□ 0.42
COL4A4P53420 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
COL4A4P53420 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.66■□□□□ 0.42
COL4A4P53420 RN7SL752P-201ENST00000463779 287 ntBASIC17.66■□□□□ 0.42
COL4A4P53420 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.66■□□□□ 0.42
COL4A4P53420 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.66■□□□□ 0.42
COL4A4P53420 AC013467.2-201ENST00000605472 835 ntBASIC17.66■□□□□ 0.42
COL4A4P53420 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.66■□□□□ 0.42
COL4A4P53420 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A4P53420 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 REXO1L6P-201ENST00000603433 1515 ntBASIC17.65■□□□□ 0.42
COL4A4P53420 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.65■□□□□ 0.42
COL4A4P53420 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 TOP3BP1-201ENST00000420768 1380 ntBASIC17.65■□□□□ 0.42
COL4A4P53420 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.65■□□□□ 0.42
COL4A4P53420 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
COL4A4P53420 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
COL4A4P53420 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.65■□□□□ 0.42
COL4A4P53420 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.65■□□□□ 0.42
COL4A4P53420 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.65■□□□□ 0.42
COL4A4P53420 AC092068.3-201ENST00000587894 2016 ntBASIC17.65■□□□□ 0.42
COL4A4P53420 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.65■□□□□ 0.42
COL4A4P53420 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.65■□□□□ 0.42
COL4A4P53420 SNX33P1-201ENST00000592116 1762 ntBASIC17.65■□□□□ 0.42
COL4A4P53420 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.65■□□□□ 0.42
COL4A4P53420 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.65■□□□□ 0.42
COL4A4P53420 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL4A4P53420 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL4A4P53420 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
COL4A4P53420 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL4A4P53420 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A4P53420 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.42
COL4A4P53420 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.64■□□□□ 0.42
COL4A4P53420 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
COL4A4P53420 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.64■□□□□ 0.42
COL4A4P53420 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.64■□□□□ 0.42
COL4A4P53420 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.64■□□□□ 0.42
COL4A4P53420 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.64■□□□□ 0.42
COL4A4P53420 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
COL4A4P53420 RN7SL618P-201ENST00000477850 296 ntBASIC17.64■□□□□ 0.42
COL4A4P53420 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.64■□□□□ 0.42
COL4A4P53420 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.64■□□□□ 0.42
COL4A4P53420 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC17.64■□□□□ 0.42
COL4A4P53420 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.64■□□□□ 0.42
COL4A4P53420 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.64■□□□□ 0.42
COL4A4P53420 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
COL4A4P53420 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
COL4A4P53420 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.64■□□□□ 0.42
COL4A4P53420 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A4P53420 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A4P53420 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A4P53420 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A4P53420 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A4P53420 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.64■□□□□ 0.41
COL4A4P53420 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms