Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.89■□□□□ 0.61
USP11P51784 MIR1233-2-201ENST00000408138 82 ntBASIC18.89■□□□□ 0.61
USP11P51784 MIR1233-1-201ENST00000408722 82 ntBASIC18.89■□□□□ 0.61
USP11P51784 AC211486.1-202ENST00000416371 468 ntBASIC18.89■□□□□ 0.61
USP11P51784 AC211476.1-201ENST00000503899 468 ntBASIC18.89■□□□□ 0.61
USP11P51784 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.89■□□□□ 0.61
USP11P51784 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.89■□□□□ 0.61
USP11P51784 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.89■□□□□ 0.61
USP11P51784 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
USP11P51784 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC18.89■□□□□ 0.61
USP11P51784 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
USP11P51784 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.89■□□□□ 0.61
USP11P51784 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.89■□□□□ 0.61
USP11P51784 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP11P51784 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.88■□□□□ 0.61
USP11P51784 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.88■□□□□ 0.61
USP11P51784 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.88■□□□□ 0.61
USP11P51784 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.88■□□□□ 0.61
USP11P51784 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.88■□□□□ 0.61
USP11P51784 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
USP11P51784 TFAMP1-201ENST00000412727 736 ntBASIC18.88■□□□□ 0.61
USP11P51784 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.88■□□□□ 0.61
USP11P51784 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.88■□□□□ 0.61
USP11P51784 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
USP11P51784 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.88■□□□□ 0.61
USP11P51784 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
USP11P51784 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.88■□□□□ 0.61
USP11P51784 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.88■□□□□ 0.61
USP11P51784 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
USP11P51784 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.88■□□□□ 0.61
USP11P51784 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
USP11P51784 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.88■□□□□ 0.61
USP11P51784 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
USP11P51784 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.88■□□□□ 0.61
USP11P51784 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.88■□□□□ 0.61
USP11P51784 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
USP11P51784 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.88■□□□□ 0.61
USP11P51784 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 FLJ38576-201ENST00000623820 2459 ntBASIC18.88■□□□□ 0.61
USP11P51784 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP11P51784 NKILA-202ENST00000614771 2598 ntBASIC18.88■□□□□ 0.61
USP11P51784 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
USP11P51784 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
USP11P51784 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.87■□□□□ 0.61
USP11P51784 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
USP11P51784 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
USP11P51784 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
USP11P51784 AC124067.4-201ENST00000519691 2379 ntBASIC18.87■□□□□ 0.61
USP11P51784 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.87■□□□□ 0.61
USP11P51784 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
USP11P51784 GPAA1P2-202ENST00000606848 1787 ntBASIC18.87■□□□□ 0.61
USP11P51784 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.87■□□□□ 0.61
USP11P51784 AC026120.1-201ENST00000611536 926 ntBASIC18.87■□□□□ 0.61
USP11P51784 AC006538.3-201ENST00000612495 578 ntBASIC18.87■□□□□ 0.61
USP11P51784 AC020765.3-201ENST00000613051 740 ntBASIC18.87■□□□□ 0.61
USP11P51784 AC139530.3-201ENST00000620344 690 ntBASIC18.87■□□□□ 0.61
USP11P51784 GGT4P-201ENST00000623672 1708 ntBASIC18.87■□□□□ 0.61
USP11P51784 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP11P51784 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms