Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHRNA4P43681 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CHRNA4P43681 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
CHRNA4P43681 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
CHRNA4P43681 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
CHRNA4P43681 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHRNA4P43681 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.91■□□□□ 0.3
CHRNA4P43681 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CHRNA4P43681 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CHRNA4P43681 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.91■□□□□ 0.3
CHRNA4P43681 AC007967.2-201ENST00000432613 625 ntBASIC16.91■□□□□ 0.3
CHRNA4P43681 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.91■□□□□ 0.3
CHRNA4P43681 AC087641.1-201ENST00000557561 1021 ntBASIC16.91■□□□□ 0.3
CHRNA4P43681 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.91■□□□□ 0.3
CHRNA4P43681 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.91■□□□□ 0.3
CHRNA4P43681 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CHRNA4P43681 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHRNA4P43681 AC010507.1-201ENST00000633895 436 ntBASIC16.91■□□□□ 0.3
CHRNA4P43681 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHRNA4P43681 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHRNA4P43681 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CHRNA4P43681 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHRNA4P43681 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHRNA4P43681 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHRNA4P43681 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHRNA4P43681 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHRNA4P43681 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHRNA4P43681 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.91■□□□□ 0.3
CHRNA4P43681 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
CHRNA4P43681 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
CHRNA4P43681 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CHRNA4P43681 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.9■□□□□ 0.3
CHRNA4P43681 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.9■□□□□ 0.3
CHRNA4P43681 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.9■□□□□ 0.3
CHRNA4P43681 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CHRNA4P43681 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 KRT18P2-201ENST00000447938 1258 ntBASIC16.9■□□□□ 0.3
CHRNA4P43681 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.9■□□□□ 0.3
CHRNA4P43681 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.9■□□□□ 0.3
CHRNA4P43681 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.9■□□□□ 0.3
CHRNA4P43681 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.9■□□□□ 0.3
CHRNA4P43681 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 AL139011.1-202ENST00000642063 584 ntBASIC16.9■□□□□ 0.3
CHRNA4P43681 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHRNA4P43681 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CHRNA4P43681 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
CHRNA4P43681 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.89■□□□□ 0.29
CHRNA4P43681 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
CHRNA4P43681 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
CHRNA4P43681 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.89■□□□□ 0.29
CHRNA4P43681 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CHRNA4P43681 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
CHRNA4P43681 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.89■□□□□ 0.29
CHRNA4P43681 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CHRNA4P43681 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.89■□□□□ 0.29
CHRNA4P43681 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.89■□□□□ 0.29
CHRNA4P43681 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.89■□□□□ 0.29
CHRNA4P43681 AL513480.1-201ENST00000451731 511 ntBASIC16.89■□□□□ 0.29
CHRNA4P43681 HLA-J-202ENST00000469281 1241 ntBASIC16.89■□□□□ 0.29
CHRNA4P43681 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.89■□□□□ 0.29
CHRNA4P43681 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.89■□□□□ 0.29
CHRNA4P43681 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.89■□□□□ 0.29
CHRNA4P43681 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CHRNA4P43681 AC018845.2-201ENST00000568326 409 ntBASIC16.89■□□□□ 0.29
CHRNA4P43681 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.89■□□□□ 0.29
CHRNA4P43681 BX640515.1-201ENST00000617215 977 ntBASIC16.89■□□□□ 0.29
CHRNA4P43681 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CHRNA4P43681 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.89■□□□□ 0.29
CHRNA4P43681 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CHRNA4P43681 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CHRNA4P43681 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms