Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
BDNFP23560 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.64■□□□□ 0.41
BDNFP23560 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.64■□□□□ 0.41
BDNFP23560 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.64■□□□□ 0.41
BDNFP23560 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
BDNFP23560 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
BDNFP23560 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.63■□□□□ 0.41
BDNFP23560 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
BDNFP23560 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
BDNFP23560 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
BDNFP23560 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
BDNFP23560 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.63■□□□□ 0.41
BDNFP23560 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.63■□□□□ 0.41
BDNFP23560 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.63■□□□□ 0.41
BDNFP23560 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.63■□□□□ 0.41
BDNFP23560 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.63■□□□□ 0.41
BDNFP23560 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.63■□□□□ 0.41
BDNFP23560 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.63■□□□□ 0.41
BDNFP23560 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.63■□□□□ 0.41
BDNFP23560 AC093520.2-201ENST00000561830 333 ntBASIC17.63■□□□□ 0.41
BDNFP23560 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.63■□□□□ 0.41
BDNFP23560 AC021097.1-201ENST00000607902 574 ntBASIC17.63■□□□□ 0.41
BDNFP23560 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.63■□□□□ 0.41
BDNFP23560 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.63■□□□□ 0.41
BDNFP23560 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.63■□□□□ 0.41
BDNFP23560 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
BDNFP23560 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
BDNFP23560 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.63■□□□□ 0.41
BDNFP23560 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
BDNFP23560 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.63■□□□□ 0.41
BDNFP23560 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
BDNFP23560 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.62■□□□□ 0.41
BDNFP23560 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.62■□□□□ 0.41
BDNFP23560 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 AC105020.1-201ENST00000435356 2205 ntBASIC17.62■□□□□ 0.41
BDNFP23560 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
BDNFP23560 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.62■□□□□ 0.41
BDNFP23560 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.62■□□□□ 0.41
BDNFP23560 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.62■□□□□ 0.41
BDNFP23560 AC005237.2-201ENST00000434368 219 ntBASIC17.62■□□□□ 0.41
BDNFP23560 SPCS2P4-201ENST00000436160 681 ntBASIC17.62■□□□□ 0.41
BDNFP23560 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 AP002490.2-201ENST00000524791 560 ntBASIC17.62■□□□□ 0.41
BDNFP23560 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.62■□□□□ 0.41
BDNFP23560 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
BDNFP23560 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
BDNFP23560 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.62■□□□□ 0.41
BDNFP23560 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.62■□□□□ 0.41
BDNFP23560 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
BDNFP23560 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
BDNFP23560 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.62■□□□□ 0.41
BDNFP23560 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
BDNFP23560 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
BDNFP23560 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.61■□□□□ 0.41
BDNFP23560 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.61■□□□□ 0.41
BDNFP23560 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BDNFP23560 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms