Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
COL6A1P12109 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
COL6A1P12109 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
COL6A1P12109 ACTBP11-201ENST00000436287 1126 ntBASIC18.33■□□□□ 0.52
COL6A1P12109 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC18.33■□□□□ 0.52
COL6A1P12109 AC007389.4-201ENST00000454674 793 ntBASIC18.33■□□□□ 0.52
COL6A1P12109 BNIP3P42-201ENST00000454982 569 ntBASIC18.33■□□□□ 0.52
COL6A1P12109 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.33■□□□□ 0.52
COL6A1P12109 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.33■□□□□ 0.52
COL6A1P12109 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 BNIP3P29-201ENST00000598302 571 ntBASIC18.33■□□□□ 0.52
COL6A1P12109 AC011447.5-201ENST00000616168 564 ntBASIC18.33■□□□□ 0.52
COL6A1P12109 MIR6787-201ENST00000616675 61 ntBASIC18.33■□□□□ 0.52
COL6A1P12109 AL109936.8-201ENST00000641772 604 ntBASIC18.33■□□□□ 0.52
COL6A1P12109 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.33■□□□□ 0.52
COL6A1P12109 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.33■□□□□ 0.52
COL6A1P12109 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
COL6A1P12109 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.33■□□□□ 0.52
COL6A1P12109 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.33■□□□□ 0.52
COL6A1P12109 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
COL6A1P12109 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL6A1P12109 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
COL6A1P12109 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL6A1P12109 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.32■□□□□ 0.52
COL6A1P12109 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL6A1P12109 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.32■□□□□ 0.52
COL6A1P12109 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.32■□□□□ 0.52
COL6A1P12109 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
COL6A1P12109 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
COL6A1P12109 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC18.32■□□□□ 0.52
COL6A1P12109 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 AC098850.1-201ENST00000419919 790 ntBASIC18.32■□□□□ 0.52
COL6A1P12109 RNA5SP410-201ENST00000516285 106 ntBASIC18.32■□□□□ 0.52
COL6A1P12109 TPRX2P-201ENST00000535362 881 ntBASIC18.32■□□□□ 0.52
COL6A1P12109 AC123567.1-201ENST00000548294 1261 ntBASIC18.32■□□□□ 0.52
COL6A1P12109 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.32■□□□□ 0.52
COL6A1P12109 AC023310.3-201ENST00000557027 670 ntBASIC18.32■□□□□ 0.52
COL6A1P12109 AC100756.1-201ENST00000562736 682 ntBASIC18.32■□□□□ 0.52
COL6A1P12109 AC138749.3-201ENST00000567691 622 ntBASIC18.32■□□□□ 0.52
COL6A1P12109 AC116165.1-201ENST00000611806 668 ntBASIC18.32■□□□□ 0.52
COL6A1P12109 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC18.32■□□□□ 0.52
COL6A1P12109 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL6A1P12109 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.32■□□□□ 0.52
COL6A1P12109 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.31■□□□□ 0.52
COL6A1P12109 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL6A1P12109 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC18.31■□□□□ 0.52
COL6A1P12109 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
COL6A1P12109 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL6A1P12109 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
COL6A1P12109 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.31■□□□□ 0.52
COL6A1P12109 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.31■□□□□ 0.52
COL6A1P12109 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.31■□□□□ 0.52
COL6A1P12109 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.31■□□□□ 0.52
COL6A1P12109 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC18.31■□□□□ 0.52
COL6A1P12109 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.31■□□□□ 0.52
COL6A1P12109 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
COL6A1P12109 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL6A1P12109 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.31■□□□□ 0.52
COL6A1P12109 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.31■□□□□ 0.52
COL6A1P12109 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC18.31■□□□□ 0.52
COL6A1P12109 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC18.31■□□□□ 0.52
COL6A1P12109 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.31■□□□□ 0.52
COL6A1P12109 QPRT-203ENST00000562473 579 ntTSL 3 BASIC18.31■□□□□ 0.52
COL6A1P12109 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.31■□□□□ 0.52
COL6A1P12109 AC008735.3-201ENST00000596646 500 ntBASIC18.31■□□□□ 0.52
COL6A1P12109 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.31■□□□□ 0.52
COL6A1P12109 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.31■□□□□ 0.52
COL6A1P12109 AC004461.2-201ENST00000629517 803 ntBASIC18.31■□□□□ 0.52
COL6A1P12109 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL6A1P12109 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.31■□□□□ 0.52
COL6A1P12109 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms