Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH5O43196 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH5O43196 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC23.2■■□□□ 1.3
MSH5O43196 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC23.2■■□□□ 1.3
MSH5O43196 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH5O43196 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH5O43196 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH5O43196 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH5O43196 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH5O43196 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC23.2■■□□□ 1.3
MSH5O43196 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH5O43196 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH5O43196 NUSAP1-203ENST00000450592 1301 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
MSH5O43196 CLEC4C-205ENST00000542353 1314 ntAPPRIS P4 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH5O43196 CENPM-204ENST00000402420 688 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH5O43196 COA5-202ENST00000409997 557 ntTSL 4 BASIC23.2■■□□□ 1.3
MSH5O43196 RN7SKP38-201ENST00000410782 309 ntBASIC23.2■■□□□ 1.3
MSH5O43196 HSPA8P3-201ENST00000449300 780 ntBASIC23.2■■□□□ 1.3
MSH5O43196 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC23.2■■□□□ 1.3
MSH5O43196 CFL1-212ENST00000531413 636 ntTSL 3 BASIC23.2■■□□□ 1.3
MSH5O43196 AC005632.2-201ENST00000564271 828 ntBASIC23.2■■□□□ 1.3
MSH5O43196 AC002347.1-201ENST00000569543 541 ntBASIC23.2■■□□□ 1.3
MSH5O43196 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH5O43196 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH5O43196 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
MSH5O43196 TPR-209ENST00000613151 2478 ntTSL 5 BASIC23.2■■□□□ 1.3
MSH5O43196 INTS4P1-201ENST00000438455 1935 ntBASIC23.2■■□□□ 1.3
MSH5O43196 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH5O43196 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH5O43196 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH5O43196 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
MSH5O43196 AC092850.2-201ENST00000623821 2697 ntBASIC23.19■■□□□ 1.3
MSH5O43196 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH5O43196 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC23.19■■□□□ 1.3
MSH5O43196 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH5O43196 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH5O43196 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH5O43196 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH5O43196 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH5O43196 ABCA1-201ENST00000374733 923 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH5O43196 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
MSH5O43196 RAP1BP3-201ENST00000407180 549 ntBASIC23.19■■□□□ 1.3
MSH5O43196 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH5O43196 Y_RNA.604-201ENST00000410574 102 ntBASIC23.19■■□□□ 1.3
MSH5O43196 USP9YP19-201ENST00000412165 485 ntBASIC23.19■■□□□ 1.3
MSH5O43196 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH5O43196 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH5O43196 AP006222.1-201ENST00000442116 1292 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH5O43196 AC025572.1-201ENST00000472243 553 ntTSL 4 BASIC23.19■■□□□ 1.3
MSH5O43196 AC104685.1-201ENST00000502445 371 ntBASIC23.19■■□□□ 1.3
MSH5O43196 AC005351.1-201ENST00000511152 786 ntBASIC23.19■■□□□ 1.3
MSH5O43196 UNC93B6-202ENST00000528242 690 ntBASIC23.19■■□□□ 1.3
MSH5O43196 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC23.19■■□□□ 1.3
MSH5O43196 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH5O43196 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC23.19■■□□□ 1.3
MSH5O43196 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH5O43196 AC027449.1-201ENST00000608890 407 ntBASIC23.19■■□□□ 1.3
MSH5O43196 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH5O43196 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH5O43196 LINC01697-206ENST00000616647 544 ntTSL 5 BASIC23.19■■□□□ 1.3
MSH5O43196 AC017037.4-201ENST00000624526 826 ntBASIC23.19■■□□□ 1.3
MSH5O43196 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC23.19■■□□□ 1.3
MSH5O43196 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH5O43196 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH5O43196 AL357033.4-201ENST00000617703 1807 ntBASIC23.19■■□□□ 1.3
MSH5O43196 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH5O43196 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC23.19■■□□□ 1.3
MSH5O43196 MST1L-201ENST00000442552 2185 ntBASIC23.18■■□□□ 1.3
MSH5O43196 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
MSH5O43196 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH5O43196 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH5O43196 AC008741.2-201ENST00000612792 3115 ntBASIC23.18■■□□□ 1.3
MSH5O43196 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH5O43196 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
MSH5O43196 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH5O43196 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH5O43196 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
MSH5O43196 SPATA22-201ENST00000268981 1280 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH5O43196 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH5O43196 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH5O43196 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH5O43196 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC23.18■■□□□ 1.3
MSH5O43196 AC004832.2-201ENST00000426397 482 ntBASIC23.18■■□□□ 1.3
MSH5O43196 RBSN-204ENST00000449050 903 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH5O43196 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH5O43196 AC112191.1-201ENST00000523689 701 ntBASIC23.18■■□□□ 1.3
MSH5O43196 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH5O43196 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH5O43196 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH5O43196 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC23.18■■□□□ 1.3
MSH5O43196 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
MSH5O43196 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH5O43196 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC23.18■■□□□ 1.3
MSH5O43196 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
MSH5O43196 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
MSH5O43196 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
MSH5O43196 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC23.17■■□□□ 1.3
MSH5O43196 AP002414.3-201ENST00000589352 1468 ntBASIC23.17■■□□□ 1.3
MSH5O43196 AF064858.1-201ENST00000417335 1412 ntTSL 5 BASIC23.17■■□□□ 1.3
MSH5O43196 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms