Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
HDAC3O15379 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
HDAC3O15379 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.36■□□□□ 0.21
HDAC3O15379 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.36■□□□□ 0.21
HDAC3O15379 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.36■□□□□ 0.21
HDAC3O15379 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.36■□□□□ 0.21
HDAC3O15379 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.36■□□□□ 0.21
HDAC3O15379 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 BX276092.5-203ENST00000456199 560 ntBASIC16.36■□□□□ 0.21
HDAC3O15379 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.36■□□□□ 0.21
HDAC3O15379 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.36■□□□□ 0.21
HDAC3O15379 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.36■□□□□ 0.21
HDAC3O15379 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.36■□□□□ 0.21
HDAC3O15379 AL121672.3-201ENST00000608644 468 ntBASIC16.36■□□□□ 0.21
HDAC3O15379 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HDAC3O15379 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.36■□□□□ 0.21
HDAC3O15379 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.36■□□□□ 0.21
HDAC3O15379 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 AC233702.3-201ENST00000578656 1387 ntBASIC16.36■□□□□ 0.21
HDAC3O15379 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
HDAC3O15379 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.36■□□□□ 0.21
HDAC3O15379 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDAC3O15379 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 AC006449.6-201ENST00000612330 2296 ntBASIC16.35■□□□□ 0.21
HDAC3O15379 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.35■□□□□ 0.21
HDAC3O15379 AL671710.1-201ENST00000610245 2349 ntBASIC16.35■□□□□ 0.21
HDAC3O15379 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HDAC3O15379 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.35■□□□□ 0.21
HDAC3O15379 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 RCN1P2-201ENST00000398357 915 ntBASIC16.35■□□□□ 0.21
HDAC3O15379 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.35■□□□□ 0.21
HDAC3O15379 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HDAC3O15379 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.35■□□□□ 0.21
HDAC3O15379 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HDAC3O15379 MINOS1P3-201ENST00000457048 203 ntBASIC16.35■□□□□ 0.21
HDAC3O15379 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.35■□□□□ 0.21
HDAC3O15379 AC096582.2-201ENST00000510860 516 ntBASIC16.35■□□□□ 0.21
HDAC3O15379 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
HDAC3O15379 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.35■□□□□ 0.21
HDAC3O15379 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.35■□□□□ 0.21
HDAC3O15379 BNIP3P18-201ENST00000593976 575 ntBASIC16.35■□□□□ 0.21
HDAC3O15379 Z69720.1-201ENST00000601483 472 ntBASIC16.35■□□□□ 0.21
HDAC3O15379 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.35■□□□□ 0.21
HDAC3O15379 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HDAC3O15379 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.35■□□□□ 0.21
HDAC3O15379 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
HDAC3O15379 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.35■□□□□ 0.21
HDAC3O15379 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HDAC3O15379 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDAC3O15379 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.35■□□□□ 0.21
HDAC3O15379 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.35■□□□□ 0.21
HDAC3O15379 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 AC104640.1-201ENST00000562617 2109 ntBASIC16.34■□□□□ 0.21
HDAC3O15379 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.34■□□□□ 0.21
HDAC3O15379 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.34■□□□□ 0.21
HDAC3O15379 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms