Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 CROCCP2-202ENST00000412962 2773 ntBASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.36■□□□□ 0.69
CTDP1Q9Y5B0 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 MIR3197-201ENST00000582241 73 ntBASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 AC021097.1-201ENST00000607902 574 ntBASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.35■□□□□ 0.69
CTDP1Q9Y5B0 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 TUBB8P12-201ENST00000308911 1335 ntBASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 TUBB7P-202ENST00000428444 1305 ntBASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 TUBB8P7-204ENST00000567960 1332 ntBASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 AC027307.2-201ENST00000591252 911 ntBASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 AP001059.3-201ENST00000619053 235 ntBASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 LINC02012-201ENST00000608206 1725 ntBASIC19.34■□□□□ 0.69
CTDP1Q9Y5B0 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 AC016027.1-202ENST00000607927 1699 ntBASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
CTDP1Q9Y5B0 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 AC008267.7-201ENST00000624570 1194 ntBASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CTDP1Q9Y5B0 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTDP1Q9Y5B0 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTDP1Q9Y5B0 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms