Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14.71□□□□□ -0.05
NKX3-1Q99801 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC14.71□□□□□ -0.05
NKX3-1Q99801 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.71□□□□□ -0.05
NKX3-1Q99801 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.71□□□□□ -0.05
NKX3-1Q99801 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
NKX3-1Q99801 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.71□□□□□ -0.05
NKX3-1Q99801 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 BX276092.5-203ENST00000456199 560 ntBASIC14.71□□□□□ -0.05
NKX3-1Q99801 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14.71□□□□□ -0.05
NKX3-1Q99801 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC14.71□□□□□ -0.05
NKX3-1Q99801 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.71□□□□□ -0.05
NKX3-1Q99801 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
NKX3-1Q99801 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
NKX3-1Q99801 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.71□□□□□ -0.06
NKX3-1Q99801 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
NKX3-1Q99801 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
NKX3-1Q99801 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
NKX3-1Q99801 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.71□□□□□ -0.06
NKX3-1Q99801 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC14.71□□□□□ -0.06
NKX3-1Q99801 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
NKX3-1Q99801 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
NKX3-1Q99801 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
NKX3-1Q99801 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 ABR-204ENST00000543210 1049 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 ABR-217ENST00000572441 563 ntTSL 4 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 AD001527.2-201ENST00000622994 785 ntBASIC14.7□□□□□ -0.06
NKX3-1Q99801 DBET-201ENST00000630918 3363 ntBASIC14.7□□□□□ -0.06
NKX3-1Q99801 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
NKX3-1Q99801 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.7□□□□□ -0.06
NKX3-1Q99801 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 TP73-AS1-210ENST00000637775 1455 ntBASIC14.69□□□□□ -0.06
NKX3-1Q99801 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 AC024909.3-201ENST00000611513 2257 ntBASIC14.69□□□□□ -0.06
NKX3-1Q99801 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.69□□□□□ -0.06
NKX3-1Q99801 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
NKX3-1Q99801 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 1158.5 ms