Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 LINC00896-202ENST00000609602 2128 ntBASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 RBPMS2P1-201ENST00000437762 623 ntBASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 IGHV3-42-201ENST00000520410 361 ntBASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 AC124947.2-201ENST00000547118 1133 ntBASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 LINC01225-203ENST00000563550 1244 ntBASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 MIR4492-201ENST00000581627 80 ntBASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HDDC3Q8N4P3 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AC092053.1-201ENST00000605787 1936 ntBASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AC108860.2-201ENST00000562760 2183 ntBASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AL512638.1-201ENST00000457493 794 ntBASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AL512356.2-201ENST00000546955 174 ntBASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 KRT8P23-201ENST00000560090 1207 ntBASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AC051619.7-201ENST00000568314 623 ntBASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AP001059.3-201ENST00000619053 235 ntBASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AC016027.1-202ENST00000607927 1699 ntBASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 PCDHB18P-201ENST00000524813 2368 ntBASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HDDC3Q8N4P3 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 RN7SL204P-201ENST00000582831 262 ntBASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms