Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC22.95■■□□□ 1.27
MSH6P52701 NOC2LP1-202ENST00000452600 2235 ntBASIC22.95■■□□□ 1.27
MSH6P52701 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC22.95■■□□□ 1.27
MSH6P52701 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC22.95■■□□□ 1.26
MSH6P52701 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC22.95■■□□□ 1.26
MSH6P52701 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
MSH6P52701 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC22.95■■□□□ 1.26
MSH6P52701 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
MSH6P52701 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
MSH6P52701 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
MSH6P52701 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
MSH6P52701 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
MSH6P52701 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
MSH6P52701 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
MSH6P52701 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC22.95■■□□□ 1.26
MSH6P52701 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC22.95■■□□□ 1.26
MSH6P52701 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC22.95■■□□□ 1.26
MSH6P52701 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC22.95■■□□□ 1.26
MSH6P52701 AC093525.8-201ENST00000624099 1342 ntBASIC22.95■■□□□ 1.26
MSH6P52701 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
MSH6P52701 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC22.95■■□□□ 1.26
MSH6P52701 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC22.94■■□□□ 1.26
MSH6P52701 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 AC099336.1-201ENST00000417053 1171 ntBASIC22.94■■□□□ 1.26
MSH6P52701 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 KLF2P4-201ENST00000451959 1225 ntBASIC22.94■■□□□ 1.26
MSH6P52701 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
MSH6P52701 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC22.94■■□□□ 1.26
MSH6P52701 AGER-214ENST00000538695 487 ntTSL 2 BASIC22.94■■□□□ 1.26
MSH6P52701 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
MSH6P52701 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC22.94■■□□□ 1.26
MSH6P52701 ARL16-210ENST00000574938 751 ntTSL 2 BASIC22.94■■□□□ 1.26
MSH6P52701 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 AL139099.5-201ENST00000635274 300 ntBASIC22.94■■□□□ 1.26
MSH6P52701 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC22.94■■□□□ 1.26
MSH6P52701 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
MSH6P52701 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC22.94■■□□□ 1.26
MSH6P52701 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC22.94■■□□□ 1.26
MSH6P52701 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
MSH6P52701 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC22.93■■□□□ 1.26
MSH6P52701 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC22.93■■□□□ 1.26
MSH6P52701 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
MSH6P52701 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 AL021920.2-201ENST00000624828 1351 ntBASIC22.93■■□□□ 1.26
MSH6P52701 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC22.93■■□□□ 1.26
MSH6P52701 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 RNA5SP412-201ENST00000516234 123 ntBASIC22.93■■□□□ 1.26
MSH6P52701 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC22.93■■□□□ 1.26
MSH6P52701 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC22.93■■□□□ 1.26
MSH6P52701 AC092337.1-201ENST00000568699 1129 ntBASIC22.93■■□□□ 1.26
MSH6P52701 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC22.93■■□□□ 1.26
MSH6P52701 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
MSH6P52701 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC22.93■■□□□ 1.26
MSH6P52701 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC22.93■■□□□ 1.26
MSH6P52701 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
MSH6P52701 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH6P52701 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH6P52701 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH6P52701 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC22.92■■□□□ 1.26
MSH6P52701 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH6P52701 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH6P52701 ELK2AP-201ENST00000392510 1007 ntBASIC22.92■■□□□ 1.26
MSH6P52701 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH6P52701 GOLGA2P4-201ENST00000441462 777 ntBASIC22.92■■□□□ 1.26
MSH6P52701 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC22.92■■□□□ 1.26
MSH6P52701 AC108725.1-201ENST00000495472 409 ntBASIC22.92■■□□□ 1.26
MSH6P52701 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC22.92■■□□□ 1.26
MSH6P52701 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC22.92■■□□□ 1.26
MSH6P52701 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH6P52701 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC22.92■■□□□ 1.26
MSH6P52701 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH6P52701 AC138028.4-201ENST00000564984 1845 ntBASIC22.92■■□□□ 1.26
MSH6P52701 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
MSH6P52701 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
MSH6P52701 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC22.92■■□□□ 1.26
MSH6P52701 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC22.92■■□□□ 1.26
MSH6P52701 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH6P52701 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
MSH6P52701 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms