Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC15.84■□□□□ 0.13
RFX3P48380 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
RFX3P48380 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.84■□□□□ 0.13
RFX3P48380 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
RFX3P48380 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
RFX3P48380 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.84■□□□□ 0.13
RFX3P48380 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RFX3P48380 FRMD8P1-201ENST00000440433 1524 ntBASIC15.84■□□□□ 0.13
RFX3P48380 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
RFX3P48380 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.83■□□□□ 0.13
RFX3P48380 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
RFX3P48380 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
RFX3P48380 AC105020.1-201ENST00000435356 2205 ntBASIC15.83■□□□□ 0.13
RFX3P48380 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.83■□□□□ 0.13
RFX3P48380 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.83■□□□□ 0.13
RFX3P48380 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.83■□□□□ 0.12
RFX3P48380 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
RFX3P48380 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
RFX3P48380 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.83■□□□□ 0.12
RFX3P48380 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.83■□□□□ 0.12
RFX3P48380 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
RFX3P48380 ELK2BP-201ENST00000415014 1224 ntBASIC15.83■□□□□ 0.12
RFX3P48380 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
RFX3P48380 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.83■□□□□ 0.12
RFX3P48380 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.83■□□□□ 0.12
RFX3P48380 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.83■□□□□ 0.12
RFX3P48380 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
RFX3P48380 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC15.83■□□□□ 0.12
RFX3P48380 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 AL590787.1-201ENST00000568856 1315 ntBASIC15.83■□□□□ 0.12
RFX3P48380 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
RFX3P48380 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
RFX3P48380 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.83■□□□□ 0.12
RFX3P48380 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.83■□□□□ 0.12
RFX3P48380 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.83■□□□□ 0.12
RFX3P48380 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.83■□□□□ 0.12
RFX3P48380 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.83■□□□□ 0.12
RFX3P48380 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RFX3P48380 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.82■□□□□ 0.12
RFX3P48380 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.82■□□□□ 0.12
RFX3P48380 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
RFX3P48380 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.82■□□□□ 0.12
RFX3P48380 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.82■□□□□ 0.12
RFX3P48380 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.82■□□□□ 0.12
RFX3P48380 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.82■□□□□ 0.12
RFX3P48380 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
RFX3P48380 LAGE3P1-201ENST00000425356 484 ntBASIC15.82■□□□□ 0.12
RFX3P48380 KRT18P67-201ENST00000432816 1264 ntBASIC15.82■□□□□ 0.12
RFX3P48380 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.82■□□□□ 0.12
RFX3P48380 TPM4P1-201ENST00000436100 807 ntBASIC15.82■□□□□ 0.12
RFX3P48380 FAAHP1-202ENST00000446499 1238 ntBASIC15.82■□□□□ 0.12
RFX3P48380 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.82■□□□□ 0.12
RFX3P48380 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.82■□□□□ 0.12
RFX3P48380 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.82■□□□□ 0.12
RFX3P48380 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.82■□□□□ 0.12
RFX3P48380 AC006557.2-201ENST00000592985 1240 ntBASIC15.82■□□□□ 0.12
RFX3P48380 AC148477.8-201ENST00000624298 468 ntBASIC15.82■□□□□ 0.12
RFX3P48380 AC107918.4-202ENST00000641623 219 ntBASIC15.82■□□□□ 0.12
RFX3P48380 AC243591.1-201ENST00000452967 1364 ntBASIC15.82■□□□□ 0.12
RFX3P48380 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.82■□□□□ 0.12
RFX3P48380 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RFX3P48380 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms