Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
HNF4AP41235 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.33■□□□□ 0.21
HNF4AP41235 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
HNF4AP41235 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HNF4AP41235 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
HNF4AP41235 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
HNF4AP41235 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.33■□□□□ 0.21
HNF4AP41235 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.33■□□□□ 0.2
HNF4AP41235 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.33■□□□□ 0.2
HNF4AP41235 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.33■□□□□ 0.2
HNF4AP41235 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.33■□□□□ 0.2
HNF4AP41235 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.33■□□□□ 0.2
HNF4AP41235 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.33■□□□□ 0.2
HNF4AP41235 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 AC013467.2-201ENST00000605472 835 ntBASIC16.33■□□□□ 0.2
HNF4AP41235 MIR7706-201ENST00000613747 67 ntBASIC16.33■□□□□ 0.2
HNF4AP41235 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.33■□□□□ 0.2
HNF4AP41235 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
HNF4AP41235 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.33■□□□□ 0.2
HNF4AP41235 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.33■□□□□ 0.2
HNF4AP41235 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.33■□□□□ 0.2
HNF4AP41235 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.33■□□□□ 0.2
HNF4AP41235 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.33■□□□□ 0.2
HNF4AP41235 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HNF4AP41235 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.33■□□□□ 0.2
HNF4AP41235 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HNF4AP41235 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HNF4AP41235 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HNF4AP41235 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
HNF4AP41235 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HNF4AP41235 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
HNF4AP41235 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HNF4AP41235 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HNF4AP41235 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.32■□□□□ 0.2
HNF4AP41235 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HNF4AP41235 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HNF4AP41235 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HNF4AP41235 HLA-A-201ENST00000376802 1334 ntBASIC16.32■□□□□ 0.2
HNF4AP41235 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HNF4AP41235 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 AC087163.2-201ENST00000457299 853 ntBASIC16.32■□□□□ 0.2
HNF4AP41235 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.32■□□□□ 0.2
HNF4AP41235 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.32■□□□□ 0.2
HNF4AP41235 AC093909.1-201ENST00000504731 1122 ntBASIC16.32■□□□□ 0.2
HNF4AP41235 AC136632.2-201ENST00000512891 861 ntBASIC16.32■□□□□ 0.2
HNF4AP41235 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.32■□□□□ 0.2
HNF4AP41235 AL662844.1-201ENST00000546340 181 ntBASIC16.32■□□□□ 0.2
HNF4AP41235 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.32■□□□□ 0.2
HNF4AP41235 AL356488.2-201ENST00000602755 427 ntBASIC16.32■□□□□ 0.2
HNF4AP41235 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.32■□□□□ 0.2
HNF4AP41235 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.32■□□□□ 0.2
HNF4AP41235 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.32■□□□□ 0.2
HNF4AP41235 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HNF4AP41235 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.32■□□□□ 0.2
HNF4AP41235 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.32■□□□□ 0.2
HNF4AP41235 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
HNF4AP41235 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.32■□□□□ 0.2
HNF4AP41235 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HNF4AP41235 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.32■□□□□ 0.2
HNF4AP41235 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.32■□□□□ 0.2
HNF4AP41235 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.31■□□□□ 0.2
HNF4AP41235 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.31■□□□□ 0.2
HNF4AP41235 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HNF4AP41235 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
HNF4AP41235 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.31■□□□□ 0.2
HNF4AP41235 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.31■□□□□ 0.2
HNF4AP41235 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HNF4AP41235 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms