Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.52■□□□□ 0.24
CDH3P22223 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CDH3P22223 KRT18P13-201ENST00000400056 1290 ntBASIC16.52■□□□□ 0.24
CDH3P22223 BX842568.4-201ENST00000421222 227 ntBASIC16.52■□□□□ 0.24
CDH3P22223 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.52■□□□□ 0.24
CDH3P22223 PGAM5P1-201ENST00000518923 814 ntBASIC16.52■□□□□ 0.24
CDH3P22223 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CDH3P22223 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.52■□□□□ 0.24
CDH3P22223 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CDH3P22223 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.52■□□□□ 0.24
CDH3P22223 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CDH3P22223 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH3P22223 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.52■□□□□ 0.23
CDH3P22223 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
CDH3P22223 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CDH3P22223 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CDH3P22223 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.51■□□□□ 0.23
CDH3P22223 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH3P22223 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CDH3P22223 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CDH3P22223 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH3P22223 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CDH3P22223 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.51■□□□□ 0.23
CDH3P22223 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
CDH3P22223 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.51■□□□□ 0.23
CDH3P22223 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.51■□□□□ 0.23
CDH3P22223 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.51■□□□□ 0.23
CDH3P22223 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH3P22223 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CDH3P22223 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 HYMAI-201ENST00000635591 3347 ntBASIC16.51■□□□□ 0.23
CDH3P22223 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH3P22223 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.51■□□□□ 0.23
CDH3P22223 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
CDH3P22223 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH3P22223 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.5■□□□□ 0.23
CDH3P22223 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
CDH3P22223 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH3P22223 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH3P22223 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
CDH3P22223 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH3P22223 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.5■□□□□ 0.23
CDH3P22223 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CDH3P22223 AC016396.2-201ENST00000562575 1417 ntBASIC16.5■□□□□ 0.23
CDH3P22223 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CDH3P22223 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH3P22223 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
CDH3P22223 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH3P22223 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 AL138688.1-201ENST00000624851 1594 ntBASIC16.5■□□□□ 0.23
CDH3P22223 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH3P22223 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH3P22223 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CDH3P22223 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH3P22223 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
CDH3P22223 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH3P22223 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms