Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.87■□□□□ 0.13
COL5A1P20908 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
COL5A1P20908 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
COL5A1P20908 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.87■□□□□ 0.13
COL5A1P20908 RPS2P32-201ENST00000439199 892 ntBASIC15.87■□□□□ 0.13
COL5A1P20908 AC093724.1-201ENST00000448659 1027 ntBASIC15.87■□□□□ 0.13
COL5A1P20908 SERBP1P3-201ENST00000459980 809 ntBASIC15.87■□□□□ 0.13
COL5A1P20908 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.87■□□□□ 0.13
COL5A1P20908 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
COL5A1P20908 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.87■□□□□ 0.13
COL5A1P20908 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.87■□□□□ 0.13
COL5A1P20908 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.87■□□□□ 0.13
COL5A1P20908 CHCHD2P3-201ENST00000603038 451 ntBASIC15.87■□□□□ 0.13
COL5A1P20908 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.87■□□□□ 0.13
COL5A1P20908 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.87■□□□□ 0.13
COL5A1P20908 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.87■□□□□ 0.13
COL5A1P20908 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
COL5A1P20908 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC15.87■□□□□ 0.13
COL5A1P20908 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.87■□□□□ 0.13
COL5A1P20908 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.87■□□□□ 0.13
COL5A1P20908 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
COL5A1P20908 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.87■□□□□ 0.13
COL5A1P20908 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.87■□□□□ 0.13
COL5A1P20908 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL5A1P20908 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL5A1P20908 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.86■□□□□ 0.13
COL5A1P20908 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.86■□□□□ 0.13
COL5A1P20908 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.86■□□□□ 0.13
COL5A1P20908 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.86■□□□□ 0.13
COL5A1P20908 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL5A1P20908 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
COL5A1P20908 AC060834.1-201ENST00000443027 2032 ntBASIC15.86■□□□□ 0.13
COL5A1P20908 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.86■□□□□ 0.13
COL5A1P20908 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.86■□□□□ 0.13
COL5A1P20908 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.86■□□□□ 0.13
COL5A1P20908 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
COL5A1P20908 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.86■□□□□ 0.13
COL5A1P20908 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.86■□□□□ 0.13
COL5A1P20908 TTTY23B-201ENST00000442790 549 ntBASIC15.86■□□□□ 0.13
COL5A1P20908 AC119751.2-201ENST00000504529 210 ntBASIC15.86■□□□□ 0.13
COL5A1P20908 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.86■□□□□ 0.13
COL5A1P20908 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.86■□□□□ 0.13
COL5A1P20908 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.86■□□□□ 0.13
COL5A1P20908 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.86■□□□□ 0.13
COL5A1P20908 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.86■□□□□ 0.13
COL5A1P20908 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
COL5A1P20908 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.86■□□□□ 0.13
COL5A1P20908 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.86■□□□□ 0.13
COL5A1P20908 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
COL5A1P20908 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
COL5A1P20908 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL5A1P20908 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
COL5A1P20908 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL5A1P20908 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
COL5A1P20908 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.85■□□□□ 0.13
COL5A1P20908 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL5A1P20908 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.85■□□□□ 0.13
COL5A1P20908 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.85■□□□□ 0.13
COL5A1P20908 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.85■□□□□ 0.13
COL5A1P20908 LINC02012-201ENST00000608206 1725 ntBASIC15.85■□□□□ 0.13
COL5A1P20908 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.85■□□□□ 0.13
COL5A1P20908 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms