Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.42■□□□□ 0.22
PCNAP12004 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.42■□□□□ 0.22
PCNAP12004 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
PCNAP12004 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.42■□□□□ 0.22
PCNAP12004 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.42■□□□□ 0.22
PCNAP12004 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.42■□□□□ 0.22
PCNAP12004 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
PCNAP12004 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PCNAP12004 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
PCNAP12004 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
PCNAP12004 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PCNAP12004 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 AC243591.1-201ENST00000452967 1364 ntBASIC16.41■□□□□ 0.22
PCNAP12004 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
PCNAP12004 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.41■□□□□ 0.22
PCNAP12004 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.41■□□□□ 0.22
PCNAP12004 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PCNAP12004 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.41■□□□□ 0.22
PCNAP12004 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.41■□□□□ 0.22
PCNAP12004 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.41■□□□□ 0.22
PCNAP12004 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PCNAP12004 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.41■□□□□ 0.22
PCNAP12004 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.41■□□□□ 0.22
PCNAP12004 AC021087.4-201ENST00000563761 564 ntBASIC16.41■□□□□ 0.22
PCNAP12004 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.41■□□□□ 0.22
PCNAP12004 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PCNAP12004 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
PCNAP12004 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.41■□□□□ 0.22
PCNAP12004 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
PCNAP12004 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PCNAP12004 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.4■□□□□ 0.22
PCNAP12004 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
PCNAP12004 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.4■□□□□ 0.22
PCNAP12004 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.4■□□□□ 0.22
PCNAP12004 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
PCNAP12004 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.4■□□□□ 0.22
PCNAP12004 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.4■□□□□ 0.22
PCNAP12004 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.4■□□□□ 0.22
PCNAP12004 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.4■□□□□ 0.22
PCNAP12004 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.4■□□□□ 0.22
PCNAP12004 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PCNAP12004 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 TUBB8P12-201ENST00000308911 1335 ntBASIC16.4■□□□□ 0.22
PCNAP12004 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 TUBB7P-202ENST00000428444 1305 ntBASIC16.4■□□□□ 0.22
PCNAP12004 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 TUBB8P7-204ENST00000567960 1332 ntBASIC16.4■□□□□ 0.22
PCNAP12004 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PCNAP12004 HYMAI-201ENST00000635591 3347 ntBASIC16.4■□□□□ 0.22
PCNAP12004 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
PCNAP12004 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PCNAP12004 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms