Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL3A1P02461 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL3A1P02461 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL3A1P02461 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL3A1P02461 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
COL3A1P02461 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
COL3A1P02461 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC21.92■■□□□ 1.1
COL3A1P02461 AC125807.1-201ENST00000483097 614 ntBASIC21.92■■□□□ 1.1
COL3A1P02461 SATB1-217ENST00000493952 626 ntTSL 3 BASIC21.92■■□□□ 1.1
COL3A1P02461 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC21.92■■□□□ 1.1
COL3A1P02461 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC21.92■■□□□ 1.1
COL3A1P02461 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
COL3A1P02461 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL3A1P02461 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL3A1P02461 AL589702.1-201ENST00000641229 1509 ntBASIC21.92■■□□□ 1.1
COL3A1P02461 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL3A1P02461 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC21.92■■□□□ 1.1
COL3A1P02461 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL3A1P02461 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL3A1P02461 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
COL3A1P02461 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL3A1P02461 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC21.92■■□□□ 1.1
COL3A1P02461 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL3A1P02461 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC21.92■■□□□ 1.1
COL3A1P02461 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL3A1P02461 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL3A1P02461 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL3A1P02461 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL3A1P02461 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC21.91■■□□□ 1.1
COL3A1P02461 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.91■■□□□ 1.1
COL3A1P02461 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC21.91■■□□□ 1.1
COL3A1P02461 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL3A1P02461 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC21.91■■□□□ 1.1
COL3A1P02461 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC21.91■■□□□ 1.1
COL3A1P02461 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.91■■□□□ 1.1
COL3A1P02461 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC21.91■■□□□ 1.1
COL3A1P02461 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC21.91■■□□□ 1.1
COL3A1P02461 AC025678.2-201ENST00000562061 970 ntBASIC21.91■■□□□ 1.1
COL3A1P02461 AC004449.1-201ENST00000564240 433 ntBASIC21.91■■□□□ 1.1
COL3A1P02461 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC21.91■■□□□ 1.1
COL3A1P02461 SPTSSB-204ENST00000617024 1292 ntBASIC21.91■■□□□ 1.1
COL3A1P02461 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL3A1P02461 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL3A1P02461 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
COL3A1P02461 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC21.91■■□□□ 1.1
COL3A1P02461 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC21.91■■□□□ 1.1
COL3A1P02461 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL3A1P02461 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL3A1P02461 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC21.91■■□□□ 1.1
COL3A1P02461 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC21.9■■□□□ 1.1
COL3A1P02461 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
COL3A1P02461 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC21.9■■□□□ 1.1
COL3A1P02461 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 AC067863.1-201ENST00000494933 530 ntBASIC21.9■■□□□ 1.1
COL3A1P02461 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC21.9■■□□□ 1.1
COL3A1P02461 CCDC74BP1-201ENST00000508880 1123 ntBASIC21.9■■□□□ 1.1
COL3A1P02461 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 DUX4L27-201ENST00000554796 1261 ntBASIC21.9■■□□□ 1.1
COL3A1P02461 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC21.9■■□□□ 1.1
COL3A1P02461 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC21.9■■□□□ 1.1
COL3A1P02461 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC21.9■■□□□ 1.1
COL3A1P02461 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC21.9■■□□□ 1.1
COL3A1P02461 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL3A1P02461 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 AD000864.1-201ENST00000624076 2295 ntBASIC21.9■■□□□ 1.1
COL3A1P02461 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 TUBB3P1-201ENST00000405796 1332 ntBASIC21.9■■□□□ 1.1
COL3A1P02461 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC21.9■■□□□ 1.1
COL3A1P02461 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
COL3A1P02461 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
COL3A1P02461 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC21.9■■□□□ 1.1
COL3A1P02461 SPCS2P1-201ENST00000561636 679 ntBASIC21.9■■□□□ 1.1
COL3A1P02461 AC140878.1-201ENST00000565277 250 ntBASIC21.9■■□□□ 1.1
COL3A1P02461 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL3A1P02461 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL3A1P02461 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
COL3A1P02461 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC21.89■■□□□ 1.1
COL3A1P02461 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL3A1P02461 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL3A1P02461 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
COL3A1P02461 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL3A1P02461 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL3A1P02461 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms