Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
CHKB-CPT1BH3BT56 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC9.31□□□□□ -0.92
CHKB-CPT1BH3BT56 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC9.31□□□□□ -0.92
CHKB-CPT1BH3BT56 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
CHKB-CPT1BH3BT56 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 RAD1-203ENST00000382038 5770 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 PLEC-210ENST00000527096 13713 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 TUBGCP4-208ENST00000564079 6798 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 RGS6-203ENST00000402788 5400 ntTSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 TRPC6-201ENST00000344327 4612 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 UNC93B8-201ENST00000511903 705 ntBASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 FN1-206ENST00000359671 8524 ntTSL 5 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 COL6A4P2-202ENST00000504443 2753 ntBASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 AC022532.1-201ENST00000624563 1728 ntBASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 CEP41-201ENST00000223208 6513 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 MADD-209ENST00000406482 5614 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
CHKB-CPT1BH3BT56 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 RNGTT-202ENST00000369485 4553 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 DAPK2-213ENST00000612884 8086 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 BTAF1-201ENST00000265990 7250 ntAPPRIS P2 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 SCN5A-209ENST00000451551 8343 ntTSL 5 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 LAMA5-201ENST00000252999 11426 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 HAUS6-202ENST00000380502 6536 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 NEDD4L-208ENST00000456173 4978 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 MCRIP2P1-201ENST00000394346 511 ntBASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC9.29□□□□□ -0.92
CHKB-CPT1BH3BT56 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC9.29□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms