Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
SMKR1H3BMG3 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
SMKR1H3BMG3 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
SMKR1H3BMG3 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
SMKR1H3BMG3 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 TSPY14P-201ENST00000303979 915 ntBASIC12.33□□□□□ -0.44
SMKR1H3BMG3 ENSA-206ENST00000361631 725 ntTSL 2 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 AC012618.2-201ENST00000428058 849 ntBASIC12.33□□□□□ -0.44
SMKR1H3BMG3 SAPCD2P2-201ENST00000431719 1174 ntBASIC12.33□□□□□ -0.44
SMKR1H3BMG3 AC068472.1-201ENST00000474589 881 ntBASIC12.33□□□□□ -0.44
SMKR1H3BMG3 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 RPS20-210ENST00000523936 899 ntTSL 2 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 AL136038.4-201ENST00000603606 1261 ntBASIC12.33□□□□□ -0.44
SMKR1H3BMG3 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 AC079602.3-201ENST00000623931 403 ntBASIC12.33□□□□□ -0.44
SMKR1H3BMG3 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
SMKR1H3BMG3 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 AL603832.2-201ENST00000566195 2125 ntBASIC12.32□□□□□ -0.44
SMKR1H3BMG3 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 MIR935-201ENST00000401179 91 ntBASIC12.32□□□□□ -0.44
SMKR1H3BMG3 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 PPOX-214ENST00000535223 664 ntTSL 3 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
SMKR1H3BMG3 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms