Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RHBDD3Q9Y3P4 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RHBDD3Q9Y3P4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RHBDD3Q9Y3P4 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
RHBDD3Q9Y3P4 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
RHBDD3Q9Y3P4 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 AC063926.3-201ENST00000624734 5658 ntBASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 AL645728.1-201ENST00000366221 2101 ntBASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 CICP6-201ENST00000457191 2729 ntBASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
RHBDD3Q9Y3P4 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 ACTG1P4-201ENST00000425123 1122 ntBASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 BX005266.1-201ENST00000473402 457 ntBASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 DUX4L17-201ENST00000557360 1267 ntBASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 PRELID1P1-202ENST00000567272 903 ntBASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 LINC02199-201ENST00000506655 2702 ntBASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.77□□□□□ -0.05
RHBDD3Q9Y3P4 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 LINC00982-205ENST00000420957 435 ntBASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 AC091304.2-201ENST00000564639 760 ntBASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 METTL23-204ENST00000586752 904 ntTSL 2 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.76□□□□□ -0.05
RHBDD3Q9Y3P4 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 AL162727.3-201ENST00000635661 2787 ntBASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.75□□□□□ -0.05
RHBDD3Q9Y3P4 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms