Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC123567.1-201ENST00000548294 1261 ntBASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 ORC6-206ENST00000568364 888 ntTSL 5 BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC21.39■■□□□ 1.01
SHANK3Q9BYB0 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 PTK7-212ENST00000476760 902 ntTSL 2 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 WNT11-204ENST00000621122 789 ntTSL 5 BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 AL589702.1-201ENST00000641229 1509 ntBASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SHANK3Q9BYB0 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 AC025048.3-201ENST00000590609 569 ntBASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 AC005702.4-201ENST00000618393 416 ntBASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SHANK3Q9BYB0 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 GPAA1P2-202ENST00000606848 1787 ntBASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 NAA38-206ENST00000576384 424 ntTSL 2 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SHANK3Q9BYB0 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 KRT223P-202ENST00000449164 1292 ntBASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 AC007389.4-201ENST00000454674 793 ntBASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 RAB43P1-201ENST00000561790 589 ntBASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SHANK3Q9BYB0 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms