Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MIR1233-1-201ENST00000408722 82 ntBASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 HCG4B-203ENST00000450128 991 ntBASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 RIN3-211ENST00000557762 517 ntTSL 3 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 AC079328.2-201ENST00000561241 3354 ntBASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.06■□□□□ 0.8
CHMP4CQ96CF2 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 AC112482.1-201ENST00000492080 688 ntBASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 AC010507.1-201ENST00000633895 436 ntBASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 AC005915.1-201ENST00000624912 2018 ntBASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CHMP4CQ96CF2 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 AP002414.1-201ENST00000391405 1147 ntBASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CHMP4CQ96CF2 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 METTL26-205ENST00000397666 726 ntTSL 2 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.03■□□□□ 0.8
CHMP4CQ96CF2 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CHMP4CQ96CF2 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms