Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.79■□□□□ 0.76
BRF1Q92994 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BRF1Q92994 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRF1Q92994 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRF1Q92994 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRF1Q92994 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRF1Q92994 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRF1Q92994 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BRF1Q92994 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BRF1Q92994 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRF1Q92994 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRF1Q92994 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRF1Q92994 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.78■□□□□ 0.76
BRF1Q92994 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.78■□□□□ 0.76
BRF1Q92994 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
BRF1Q92994 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.78■□□□□ 0.76
BRF1Q92994 HLA-J-202ENST00000469281 1241 ntBASIC19.78■□□□□ 0.76
BRF1Q92994 UNC93B6-202ENST00000528242 690 ntBASIC19.78■□□□□ 0.76
BRF1Q92994 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.78■□□□□ 0.76
BRF1Q92994 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.78■□□□□ 0.76
BRF1Q92994 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.78■□□□□ 0.76
BRF1Q92994 AL139011.1-202ENST00000642063 584 ntBASIC19.78■□□□□ 0.76
BRF1Q92994 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRF1Q92994 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRF1Q92994 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
BRF1Q92994 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRF1Q92994 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.78■□□□□ 0.76
BRF1Q92994 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRF1Q92994 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRF1Q92994 AL353732.1-201ENST00000569618 1459 ntBASIC19.78■□□□□ 0.76
BRF1Q92994 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.78■□□□□ 0.76
BRF1Q92994 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
BRF1Q92994 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.77■□□□□ 0.76
BRF1Q92994 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.77■□□□□ 0.76
BRF1Q92994 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.77■□□□□ 0.76
BRF1Q92994 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.77■□□□□ 0.76
BRF1Q92994 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 AC093909.1-201ENST00000504731 1122 ntBASIC19.77■□□□□ 0.76
BRF1Q92994 IGHV3-22-201ENST00000520721 359 ntBASIC19.77■□□□□ 0.76
BRF1Q92994 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
BRF1Q92994 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.77■□□□□ 0.76
BRF1Q92994 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
BRF1Q92994 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.77■□□□□ 0.76
BRF1Q92994 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
BRF1Q92994 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
BRF1Q92994 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.77■□□□□ 0.76
BRF1Q92994 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BRF1Q92994 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.77■□□□□ 0.75
BRF1Q92994 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
BRF1Q92994 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
BRF1Q92994 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
BRF1Q92994 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
BRF1Q92994 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
BRF1Q92994 AC005052.1-201ENST00000625181 2492 ntBASIC19.76■□□□□ 0.75
BRF1Q92994 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.76■□□□□ 0.75
BRF1Q92994 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.76■□□□□ 0.75
BRF1Q92994 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
BRF1Q92994 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
BRF1Q92994 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
BRF1Q92994 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 AC009947.1-201ENST00000444350 727 ntBASIC19.76■□□□□ 0.75
BRF1Q92994 RNA5SP415-201ENST00000517246 115 ntBASIC19.76■□□□□ 0.75
BRF1Q92994 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.76■□□□□ 0.75
BRF1Q92994 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.76■□□□□ 0.75
BRF1Q92994 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.76■□□□□ 0.75
BRF1Q92994 MIR4751-201ENST00000578027 74 ntBASIC19.76■□□□□ 0.75
BRF1Q92994 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.76■□□□□ 0.75
BRF1Q92994 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.76■□□□□ 0.75
BRF1Q92994 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.76■□□□□ 0.75
BRF1Q92994 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
BRF1Q92994 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BRF1Q92994 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms