Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.8■□□□□ 0.28
HMGB4Q8WW32 AC241585.1-201ENST00000433527 519 ntBASIC16.8■□□□□ 0.28
HMGB4Q8WW32 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 AC027369.6-201ENST00000525520 931 ntBASIC16.8■□□□□ 0.28
HMGB4Q8WW32 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 AC021097.1-201ENST00000607902 574 ntBASIC16.8■□□□□ 0.28
HMGB4Q8WW32 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HMGB4Q8WW32 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 KRT18P34-201ENST00000488218 1270 ntBASIC16.79■□□□□ 0.28
HMGB4Q8WW32 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 AC018529.1-201ENST00000613063 361 ntBASIC16.79■□□□□ 0.28
HMGB4Q8WW32 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 FRMD8P1-201ENST00000440433 1524 ntBASIC16.79■□□□□ 0.28
HMGB4Q8WW32 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGB4Q8WW32 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 AC105233.2-201ENST00000523697 349 ntBASIC16.78■□□□□ 0.28
HMGB4Q8WW32 AF228730.5-201ENST00000530288 346 ntBASIC16.78■□□□□ 0.28
HMGB4Q8WW32 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 RARRES2P9-201ENST00000565168 469 ntBASIC16.78■□□□□ 0.28
HMGB4Q8WW32 AC073592.8-201ENST00000624126 511 ntBASIC16.78■□□□□ 0.28
HMGB4Q8WW32 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB4Q8WW32 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms